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Protocols

PhosPhAt specifications

Information


Unique identifier OMICS_33520
Name PhosPhAt
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Allowed
Version 4.0
Maintained Yes

Maintainer


  • person_outline Waltraud Schulze

Publications for PhosPhAt

PhosPhAt citations

 (28)
library_books

Cold and Heat Stress Diversely Alter Both Cauliflower Respiration and Distinct Mitochondrial Proteins Including OXPHOS Components and Matrix Enzymes

2018
Int J Mol Sci
PMCID: 5877738
PMID: 29547512
DOI: 10.3390/ijms19030877

[…] scot Score exceeding the threshold value corresponding to <5% False Positive Rate, calculated by Mascot procedure, were considered to be positively identified. Phosphorylation sites were predicted by PhosPhAt v4.0 (Available online: http://phosphat.uni-hohenheim.de/; []), NetPhos v2.0, available online: (http://www.cbs.dtu.dk/services/NetPhos-2.0/; []) and MUsite v1.0 (Available online: www.musite […]

library_books

Activation of the LRR Receptor Like Kinase PSY1R Requires Transphosphorylation of Residues in the Activation Loop

2017
Front Plant Sci
PMCID: 5712095
PMID: 29230231
DOI: 10.3389/fpls.2017.02005

[…] It is surprising that we did not detect any phosphorylation sites within the JMD previously reported to be important for the function of plant RLKs (; ; ; ). The in vivo phosphorylation site database PhosPhAt 4.0 () contains two PSY1R phosphorylation sites, Ser8 and Ser10, which are probably not authentic PSY1R autophosphorylation sites, as they are located within the predicted signal sequence.Her […]

library_books

Quantitative Phosphoproteomic Analysis Provides Insight into the Response to Short Term Drought Stress in Ammopiptanthus mongolicus Roots

2017
Int J Mol Sci
PMCID: 5666839
PMID: 29039783
DOI: 10.3390/ijms18102158

[…] es to BLAST search the Arabidopsis protein database TAIR10 (www.arabidopsis.org) to determine the Arabidopsis orthologs, then the phosphorylation information of the corresponding S, T, and Y sites in PhosPhAt database (v4.0) [] were checked manually to determine the extent of the conservation of phosphorylation sites between ortholog pairs from A. thaliana and A. mongolicus. The thresholds for BLA […]

library_books

Conjecture Regarding Posttranslational Modifications to the Arabidopsis Type I Proton Pumping Pyrophosphatase (AVP1)

2017
Front Plant Sci
PMCID: 5601048
PMID: 28955362
DOI: 10.3389/fpls.2017.01572

[…] tive AVP1 kinases were identified. Several phosphorylation targets on AVP1 were predicted: S46, S47, S48, T176, Y252, T576, T633 and Y700 (Supplementary Figure ). These targets were also predicted by PHOSPHAT (Figure ). Arabidopsis thaliana encodes kinases related to Casein Kinase 1 (CKI), Cyclin-dependent Kinase 2 (cdc2), Protein Kinase C (PKC), Mitogen-activated Protein Kinase (MAPK) and the tra […]

call_split

Pathological findings in the red fox (Vulpes vulpes), stone marten (Martes foina) and raccoon dog (Nyctereutes procyonoides), with special emphasis on infectious and zoonotic agents in Northern Germany

2017
PLoS One
PMCID: 5388480
PMID: 28399176
DOI: 10.1371/journal.pone.0175469
call_split See protocol

[…] repeated 35 times; 95°C for 1 min, 55°C for 30 sec and 95°C for 30 sec. A no template control was included in the run. The isolated fox DNA served as positive control, using canine Glycerinaldehyd-3-phosphat-Dehydrogenase (GAPDH) specific primers (forw: 5′-GTCATCAACGGGAAGTCCATCTC-3′; rev: 5′-AACATACTCAGCACCAGCATCAC-3′) as well as DNA from a pig suffering from porcine circovirus 2 (PCV-2) using PC […]

library_books

Plant genome and transcriptome annotations: from misconceptions to simple solutions

2017
Brief Bioinform
PMCID: 5952960
PMID: 28062412
DOI: 10.1093/bib/bbw135

[…] y, as for transmembrane domains (i.e. after splitting of the file from Step (i)), subcellular localization can be predicted using the online tools TargetP and/or AtSubP.(v) Finally, one could use the PhosPhat and PHOSFER online tools for a prediction of phosphorylation sites.After the annotation process is complete, it is advisable to look at a selection of these annotations to verify whether they […]

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PhosPhAt institution(s)
Max Planck Institut für molekulare Pflanzenphysiologie, Golm, Germany

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