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Phosphorylation site assignment of high throughput tandem mass spectrometry (LC-MS/MS) data is one of the most common and critical aspects of phosphoproteomics. Correctly assigning phosphorylated residues helps us understand their biological significance.
(Saeed et al., 2013) PhosSA: Fast and accurate phosphorylation site assignment algorithm for mass spectrometry data. Proteome Sci.