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Phosphorylation site databases | Post-translational modification analysis

PSP
Dataset

PSP PhosphoSitePlus

A knowledgebase dedicated to mammalian post-translational modifications (PTMs),…

A knowledgebase dedicated to mammalian post-translational modifications (PTMs), contains over 330 000 non-redundant PTMs, including phospho, acetyl, ubiquityl and methyl groups. Over 95% of the sites…

HPRD
Dataset

HPRD Human Protein Reference Database

Represents a centralized platform to visually depict and integrate information…

Represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for…

SoyKB
Dataset

SoyKB Soybean Knowledge Base

A comprehensive web resource developed for bridging soybean translational…

A comprehensive web resource developed for bridging soybean translational genomics and molecular breeding research. It provides information for six entities including genes/proteins, microRNAs/sRNAs,…

Phospho.ELM
Dataset

Phospho.ELM

A relational database designed to store in vivo and in vitro phosphorylation…

A relational database designed to store in vivo and in vitro phosphorylation data extracted from the scientific literature and phosphoproteomic analyses.

P3DB
Dataset

P3DB Plant Protein Phosphorylation DataBase

Provides a resource of protein phosphorylation data from multiple plants. With…

Provides a resource of protein phosphorylation data from multiple plants. With the large-scale phosphorylation data and associated web-based tools, P3DB will be a valuable resource for both plant and…

PhosPhAt
Web

PhosPhAt

Contains information on Arabidopsis phosphorylation sites which were identified…

Contains information on Arabidopsis phosphorylation sites which were identified by mass spectrometry in large scale experiments by different research groups. Specific information about the peptide…

Phospho3D
Dataset

Phospho3D

A database of three-dimensional structures of phosphorylation sites which…

A database of three-dimensional structures of phosphorylation sites which stores information retrieved from the Phospho.ELM database and which is enriched with structural information and annotations…

LymPHOS
Dataset

LymPHOS

An open access database for storage, sharing and visualization of data related…

An open access database for storage, sharing and visualization of data related with the human T-lymphocyte phosphoproteome. LymPHOS aims to provide a complete set of experimental data including…

SubPhosDB
Dataset

SubPhosDB

A compartment-wide map of phosphorylation sites from eight human subcellular…

A compartment-wide map of phosphorylation sites from eight human subcellular compartments analyzed by proteomic characterizations. 10,265 phosphorylation proteins are collected for different…

PhosphoGRID
Dataset

PhosphoGRID

An online database of experimentally verified in vivo protein phosphorylation…

An online database of experimentally verified in vivo protein phosphorylation sites in the model eukaryotic organism Saccharomyces cerevisisae.

PepCyber:P~PEP
Dataset

PepCyber:P~PEP PepCyber:P approximately PEP

A constructed database specialized in documenting human phosphoprotein-binding…

A constructed database specialized in documenting human phosphoprotein-binding domain (PPBD)-containing proteins and PPBD-mediated interactions.

FPD
Dataset

FPD Fungi Phosphorylation Database

Comprises high-confidence in vivo phosphosites identified by MS-based…

Comprises high-confidence in vivo phosphosites identified by MS-based proteomics in various fungal species. FPD contains 62,272 non-redundant phosphorylation sites in 11,222 proteins across eight…

PFP
Dataset

PFP Predict Functional Phosphosites

A tool exploring the intrinsic features of functional phosphorylation sites to…

A tool exploring the intrinsic features of functional phosphorylation sites to predict whether a phosphosite is likely to be functional. PFP focused on evaluating the intrinsic characteristics of…

dbPAF
Dataset

dbPAF database of Phospho-sites in Animals and Fungi

A curated database of dbPAF, containing known phosphorylation sites in H.…

A curated database of dbPAF, containing known phosphorylation sites in H. sapiens, M. musculus, R. norvegicus, D. melanogaster, C. elegans, S. pombe and S. cerevisiae. From the scientific literature…

PhosphoNetworks
Dataset

PhosphoNetworks

Integrates two kinds of high-throughput phosphorylation data, protein…

Integrates two kinds of high-throughput phosphorylation data, protein microarray-verified kinase–substrate relationships (KSRs) and mass spectrometry (MS)-verified phosphorylation sites. Relative…

dbPSP
Dataset

dbPSP

A curated database of phosphorylation sites in prokaryotes for 96 prokaryotic…

A curated database of phosphorylation sites in prokaryotes for 96 prokaryotic organisms, which belong to 11 phyla in two domains including bacteria and archaea. All the phosphorylation sites were…

PhosSNP
Dataset

PhosSNP

A systematic analysis to detect nsSNPs that potentially influence protein…

A systematic analysis to detect nsSNPs that potentially influence protein phosphorylation status. It is freely available for academic researchers.

dbPPT
Dataset

dbPPT database of Phosphorylation site in PlanTs

A comprehensive database which contains experimentally identified…

A comprehensive database which contains experimentally identified phosphorylation sites in proteins from plants. The phosphorylation sites in dbPPT were manually curated from the literatures, whereas…

PhosphoNET
Dataset

PhosphoNET

An open-access, online resource developed by Kinexus Bioinformatics Corporation…

An open-access, online resource developed by Kinexus Bioinformatics Corporation to foster the study of cell signalling systems to advance biomedical research in academia and industry.

PhospoPep
Dataset

PhospoPep

A project to support systems biology signaling research by providing…

A project to support systems biology signaling research by providing interactive interrogation of MS-derived phosphorylation data from four different organisms. Currently the database hosts…

PHOSIDA
Dataset

PHOSIDA

Allows the retrieval of phosphorylation, acetylation, and N-glycosylation data…

Allows the retrieval of phosphorylation, acetylation, and N-glycosylation data of any protein of interest. PHOSIDA lists posttranslational modification sites associated with particular projects and…

MAPRes
Dataset

MAPRes

It was utilized to investigate the influence of the surrounding amino acids of…

It was utilized to investigate the influence of the surrounding amino acids of post-translationally and co-translationally modifiable sites. It has been upgraded to take into account the different…

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