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Phosphorylation site databases | Post-translational modification analysis

PSP
Dataset

PSP PhosphoSitePlus

Provides information and resources to facilitate phosphorylation research.…

Provides information and resources to facilitate phosphorylation research. PhosphoSite is a curated database dedicated to aggregating information on physiological protein phosphorylation sites. Its…

PTMfunc
Dataset

PTMfunc

A repository of functional predictions for protein post-translational…

A repository of functional predictions for protein post-translational modifications (PTMs).

HPRD
Dataset

HPRD Human Protein Reference Database

Provides access to experimentally derived information about the human proteome…

Provides access to experimentally derived information about the human proteome including protein–protein interactions (PPIs), post-translational modifications (PTMs) and tissue expression. HPRD is an…

RIKEN Plant…
Dataset

RIKEN Plant Phosphoproteome Database

Supplies information about phosphopeptides which were identified from…

Supplies information about phosphopeptides which were identified from Arabidopsis and rice cells by liquid chromatography-mass spectrometry (LC-MS) and tandem mass spectrometry (MS/MS)-based shotgun…

SoyKB
Dataset

SoyKB Soybean Knowledge Base

A comprehensive web resource developed for bridging soybean translational…

A comprehensive web resource developed for bridging soybean translational genomics and molecular breeding research. It provides information for six entities including genes/proteins, microRNAs/sRNAs,…

PhosPhAt
Web

PhosPhAt

Contains information on Arabidopsis phosphorylation sites which were identified…

Contains information on Arabidopsis phosphorylation sites which were identified by mass spectrometry in large scale experiments by different research groups. Specific information about the peptide…

KANPHOS
Dataset

KANPHOS Kinase-Associated Neural Phospho-Signaling

Provides phosphorylated sites for kinases. KANPHOS offers a tuple of a kinase,…

Provides phosphorylated sites for kinases. KANPHOS offers a tuple of a kinase, its substrate, the extracellular signal for the phosphorylation, and the experimental condition used for the…

Phospho.ELM
Dataset

Phospho.ELM

A relational database designed to store in vivo and in vitro phosphorylation…

A relational database designed to store in vivo and in vitro phosphorylation data extracted from the scientific literature and phosphoproteomic analyses.

scan-x
Dataset

scan-x

Allows users to search and find motifs with any sequence data set. scan-x is…

Allows users to search and find motifs with any sequence data set. scan-x is made to take output of motif-x and scan protein sequence files for the occurrences of these motifs in other proteins or…

Phospho3D
Dataset

Phospho3D

Supplies a repository composed of 3D structures of phosphorylation sites…

Supplies a repository composed of 3D structures of phosphorylation sites (P-sites) stemmed from the Phospho.ELM database. Phospho3D enhances data from the previous database at the residue level with…

P3DB
Dataset

P3DB Plant Protein Phosphorylation DataBase

Provides a resource of protein phosphorylation data from multiple plants. With…

Provides a resource of protein phosphorylation data from multiple plants. With the large-scale phosphorylation data and associated web-based tools, P3DB will be a valuable resource for both plant and…

PepBase
Dataset

PepBase

Gathers information about mass spectrometry (MS)/MS spectra. PepBase is a…

Gathers information about mass spectrometry (MS)/MS spectra. PepBase is a peptide database that consists in a grouping of experimental data handled by a single analytical platform at the proteomics…

LymPHOS
Dataset

LymPHOS

An open access database for storage, sharing and visualization of data related…

An open access database for storage, sharing and visualization of data related with the human T-lymphocyte phosphoproteome. LymPHOS aims to provide a complete set of experimental data including…

KiPho
Dataset

KiPho

Provides a searchable platform for retrieval of information regarding structure…

Provides a searchable platform for retrieval of information regarding structure similarity, function and published literature about Plasmodium kinases and phosphatases. KiPho is a web resource…

pTestis
Dataset

pTestis Phosphorylation in Testis

Provides user-friendly accession of phosphoproteome in testis. pTestis is a…

Provides user-friendly accession of phosphoproteome in testis. pTestis is a database that integrates all of the identified phosphorylation sites along with UniProt annotations into the database, with…

SubPhosDB
Dataset

SubPhosDB

A compartment-wide map of phosphorylation sites from eight human subcellular…

A compartment-wide map of phosphorylation sites from eight human subcellular compartments analyzed by proteomic characterizations. 10,265 phosphorylation proteins are collected for different…

PhosphoGRID
Dataset

PhosphoGRID

An online database of experimentally verified in vivo protein phosphorylation…

An online database of experimentally verified in vivo protein phosphorylation sites in the model eukaryotic organism Saccharomyces cerevisisae.

PepCyber:P~PEP
Dataset

PepCyber:P~PEP PepCyber:P approximately PEP

A constructed database specialized in documenting human phosphoprotein-binding…

A constructed database specialized in documenting human phosphoprotein-binding domain (PPBD)-containing proteins and PPBD-mediated interactions.

FPD
Dataset

FPD Fungi Phosphorylation Database

Comprises high-confidence in vivo phosphosites identified by MS-based…

Comprises high-confidence in vivo phosphosites identified by MS-based proteomics in various fungal species. FPD contains 62,272 non-redundant phosphorylation sites in 11,222 proteins across eight…

PFP
Dataset

PFP Predict Functional Phosphosites

A tool exploring the intrinsic features of functional phosphorylation sites to…

A tool exploring the intrinsic features of functional phosphorylation sites to predict whether a phosphosite is likely to be functional. PFP focused on evaluating the intrinsic characteristics of…

dbPAF
Dataset

dbPAF database of Phospho-sites in Animals and Fungi

A curated database of dbPAF, containing known phosphorylation sites in H.…

A curated database of dbPAF, containing known phosphorylation sites in H. sapiens, M. musculus, R. norvegicus, D. melanogaster, C. elegans, S. pombe and S. cerevisiae. From the scientific literature…

PhosphoNetworks
Dataset

PhosphoNetworks

Integrates two kinds of high-throughput phosphorylation data, protein…

Integrates two kinds of high-throughput phosphorylation data, protein microarray-verified kinase–substrate relationships (KSRs) and mass spectrometry (MS)-verified phosphorylation sites. Relative to…

dbPSP
Dataset

dbPSP

A curated database of phosphorylation sites in prokaryotes for 96 prokaryotic…

A curated database of phosphorylation sites in prokaryotes for 96 prokaryotic organisms, which belong to 11 phyla in two domains including bacteria and archaea. All the phosphorylation sites were…

PhosSNP
Dataset

PhosSNP

A systematic analysis to detect nsSNPs that potentially influence protein…

A systematic analysis to detect nsSNPs that potentially influence protein phosphorylation status. It is freely available for academic researchers.

dbPPT
Dataset

dbPPT database of Phosphorylation site in PlanTs

A comprehensive database which contains experimentally identified…

A comprehensive database which contains experimentally identified phosphorylation sites in proteins from plants. The phosphorylation sites in dbPPT were manually curated from the literatures, whereas…

PhosphoNET
Dataset

PhosphoNET

An open-access, online resource developed by Kinexus Bioinformatics Corporation…

An open-access, online resource developed by Kinexus Bioinformatics Corporation to foster the study of cell signalling systems to advance biomedical research in academia and industry.

PhospoPep
Dataset

PhospoPep

A project to support systems biology signaling research by providing…

A project to support systems biology signaling research by providing interactive interrogation of MS-derived phosphorylation data from four different organisms. Currently the database hosts…

PHOSIDA
Dataset

PHOSIDA

Allows the retrieval of phosphorylation, acetylation, and N-glycosylation data…

Allows the retrieval of phosphorylation, acetylation, and N-glycosylation data of any protein of interest. PHOSIDA lists posttranslational modification sites associated with particular projects and…

The…
Dataset

The Phosphorylation Site Database

Provides a resource for persons seeking an entry into an emerging area of…

Provides a resource for persons seeking an entry into an emerging area of interest. The Phosphorylation Site Database is an online resource that: (i) provides content of significant utility not…

MAPRes
Dataset

MAPRes

It was utilized to investigate the influence of the surrounding amino acids of…

It was utilized to investigate the influence of the surrounding amino acids of post-translationally and co-translationally modifiable sites. It has been upgraded to take into account the different…

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