PhosphoSiteAnalyzer specifications

Unique identifier:
OMICS_05951
Interface:
Command line interface
Input data:
A protein sequence, a phosphoSiteInformation file ((information about the position), an annotation file (same information as the phosphoSiteInformation file combined with a subset index column), an annotation/expression file (same information as the annotation file combined with a signal power column).
Output format:
PDF, TXT
Programming languages:
C#
Version:
1.4
Requirements:
R, Adobe Reader, .Net
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA, TXTOutput data: Figures and tables
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

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PhosphoSiteAnalyzer distribution

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Publications

Institution(s)

Center for Experimental BioInformatics, Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Odense, Denmark; Department of Proteomics and Signal Transduction, Max-Planck-Institute of Biochemistry, Munich, Martinsried, Germany

Funding source(s)

This work was supported by grants from the European Community’s Seventh Framework Program (FP7/2007-2013) under grant agreement no. HEALTH-F4-2007-200767 for the collaborative project APOSYS and HEALTH-F4-2008-201648 for the collaborative project PROSPECTS.

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