PhosphoSiteAnalyzer specifications


Unique identifier OMICS_05951
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A protein sequence, a phosphoSiteInformation file ((information about the position), an annotation file (same information as the phosphoSiteInformation file combined with a subset index column), an annotation/expression file (same information as the annotation file combined with a signal power column).
Input format FASTA, TXTOutput data: Figures and tables
Output format PDF, TXT
Operating system Unix/Linux
Programming languages C#
Computer skills Advanced
Version 1.4
Stability Stable
Requirements R, Adobe Reader, .Net
Maintained Yes



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PhosphoSiteAnalyzer article

PhosphoSiteAnalyzer institution(s)
Center for Experimental BioInformatics, Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Odense, Denmark; Department of Proteomics and Signal Transduction, Max-Planck-Institute of Biochemistry, Munich, Martinsried, Germany
PhosphoSiteAnalyzer funding source(s)
This work was supported by grants from the European Community’s Seventh Framework Program (FP7/2007-2013) under grant agreement no. HEALTH-F4-2007-200767 for the collaborative project APOSYS and HEALTH-F4-2008-201648 for the collaborative project PROSPECTS.

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