PhosphoSVM statistics

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Associated diseases

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PhosphoSVM specifications

Information


Unique identifier OMICS_04200
Name PhosphoSVM
Software type Application/Script
Interface Web user interface
Restrictions to use None
Input data A protein sequence.
Input format FASTA, TXT
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Chi Zhang <>

Publications for PhosphoSVM

PhosphoSVM in publications

 (4)
PMCID: 5738411
PMID: 29263348
DOI: 10.1038/s41598-017-18256-3

[…] regions using netphos 3.1 (that predicts both generic- and kinase-specific phosphorylation sites), gps 3.0 (that predicts kinase-specific phosphorylation sites in a proteome-wide level), or phosphosvm (that is a non-kinase-specific prediction tool) (supplementary fig. ). there were no similarities between the predicted possible phosphorylation sites in the serca1a-binding regions […]

PMCID: 5410141
PMID: 28462053
DOI: 10.7717/peerj.3261

[…] specific yet conserved motif in the target protein (; ; ). for example, to predict phosphorylation sites, a number of local sequence based tools have been developed, such as gps 2.0 (), musite (), phosphosvm (), netphos () and kinasephos 2.0 (). besides phosphorylation, much effort also has been contributed to developing bioinformatics tools to identify other ptm sites. developed a prediction […]

PMCID: 4683166
PMID: 26680990
DOI: 10.1007/s00894-015-2874-z

[…] ubiquitination, and sumoylation as predicted by 20 different software programs. the software used to predict phosphorylation were netphosk 1.0 [], netphos 2.0 [], kinasephos 2.0 [], diphos [], phosphosvm [], scansite, musite [], and ppsp []. acetylation sites were predicted using pail [], aseb [], brabsb-phka [], lysacet [], and lacep []. methylation sites were predicted using bpb-ppms [] […]

PMCID: 4139591
PMID: 25056123
DOI: 10.1007/s00894-014-2357-7

[…] methylation, ubiquitination, and sumoylation as predicted by 30 different software. the software used to predict phosphorylation were netphosk 1.0 and 2.0 [], kinasephos 2.0 [], diphos [], phosphosvm [], scansite [], musite [], ppsp [], and gps 2.0 []. additionally, 3d phosphorylation prediction was performed using phos3d []. acetylation sites were predicted using pail [], predmod [], […]


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PhosphoSVM institution(s)
School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE, USA
PhosphoSVM funding source(s)
Supported by University of Nebraska, Lincoln, NE.

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