PhosSA specifications

Information


Unique identifier OMICS_06881
Name PhosSA
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes

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Publication for PhosSA

PhosSA in publications

 (2)
PMCID: 4790442
PMID: 26539879
DOI: 10.1021/acs.analchem.5b04123

[…] flr based on a target-decoy framework, in which artificial phosphorylation is used to generate decoy phosphopeptides to compare with target matches from a database search. another alternative, phossa, implemented a fast and scalable (reported up to 0.5 million spectra/hour) linear-time and space-dynamic programming strategy for phosphosite assignment. phossa sums peak intensities […]

PMCID: 3601063
PMID: 23527152
DOI: 10.1371/journal.pone.0059285

[…] the dataset was filtered to give a <1% false discovery rate at peptide level using the target decoy method. the phosphorylation site assignment was performed using a dynamic programming algorithm phossa (http://helixweb.nih.gov/esbl/phossa/) which has been optimized for hcd fragmentation ., abundance ratios (cspg/control) were quantified by proteome discoverer and quari, in-house algorithms […]


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