Protocols

PhosSNP specifications

Information


Unique identifier OMICS_05990
Name PhosSNP
Restrictions to use None
Maintained Yes

Maintainer


  • person_outline Yu Xue

Publication for PhosSNP

PhosSNP citations

 (2)
call_split

Impact of SNPs on Protein Phosphorylation Status in Rice (Oryza sativa L.)

2016
Int J Mol Sci
PMCID: 5133773
PMID: 27845739
DOI: 10.3390/ijms17111738
call_split See protocol

[…] d by 7 residues upstream and 7 residues downstream, were extracted from the protein sequences and constructed as a dataset. By comparing results of the two kinds of phosphorylation site datasets, the phosSNP that might influence protein phosphorylation status could be detected based on the definition. […]

library_books

Parkinson Related LRRK2 Mutation R1628P Enables Cdk5 Phosphorylation of LRRK2 and Upregulates Its Kinase Activity

2016
PLoS One
PMCID: 4773127
PMID: 26930193
DOI: 10.1371/journal.pone.0149739

[…] population in many previous studies[–]. However, the definite molecular mechanism about how R1628P variant lead to PD was still unclear.The bioinformatics predictions using GPS 3.0, SCANSITE 3.0 and PhosSNP 1.0 suggested that R1628P mutation could turn its adjacent amino acid residues, serine 1627 (S1627) to a new candidate for phosphorylation by cyclin-dependent kinase 5 (Cdk5), one of the key k […]

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