PhyBin statistics

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Citations per year

Number of citations per year for the bioinformatics software tool PhyBin
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Tool usage distribution map

This map represents all the scientific publications referring to PhyBin per scientific context
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Associated diseases

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Popular tool citations

chevron_left Phylogenetic network construction chevron_right
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PhyBin specifications

Information


Unique identifier OMICS_21685
Name PhyBin
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Version 0.3
Stability Stable
Source code URL http://hackage.haskell.org/package/phybin
Maintained Yes

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Versioning


No version available

Maintainers


  • person_outline Irene Newton
  • person_outline Ryan Newton

Publication for PhyBin

PhyBin citation

library_books

Clustering Genes of Common Evolutionary History

2016
Mol Biol Evol
PMCID: 4868114
PMID: 26893301
DOI: 10.1093/molbev/msw038

[…] stance among bipartitions weighted by bootstrap support, and for clustering Leigh et al. use a version of the k-means algorithm and a spectral clustering method (; ). A conceptually similar method is PhyBin (), which can either identify genes with topologically identical trees or perform hierarchical clustering on the Robinson-Foulds distance matrix between every tree.Statistical binning () uses a […]


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PhyBin institution(s)
School of Informatics and Computing, Indiana University, Bloomington, IN, USA; Department of Biology, Indiana University, Bloomington, IN, USA
PhyBin funding source(s)
Supported by a generous laboratory startup given by Indiana University.

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