PhyBin statistics

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Citations per year

Number of citations per year for the bioinformatics software tool PhyBin

Tool usage distribution map

This map represents all the scientific publications referring to PhyBin per scientific context
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Associated diseases


Popular tool citations

chevron_left Phylogenetic network construction chevron_right
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PhyBin specifications


Unique identifier OMICS_21685
Name PhyBin
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Version 0.3
Stability Stable
Source code URL
Maintained Yes




No version available


  • person_outline Irene Newton
  • person_outline Ryan Newton

Publication for PhyBin

PhyBin citation


Clustering Genes of Common Evolutionary History

Mol Biol Evol
PMCID: 4868114
PMID: 26893301
DOI: 10.1093/molbev/msw038

[…] stance among bipartitions weighted by bootstrap support, and for clustering Leigh et al. use a version of the k-means algorithm and a spectral clustering method (; ). A conceptually similar method is PhyBin (), which can either identify genes with topologically identical trees or perform hierarchical clustering on the Robinson-Foulds distance matrix between every tree.Statistical binning () uses a […]

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PhyBin institution(s)
School of Informatics and Computing, Indiana University, Bloomington, IN, USA; Department of Biology, Indiana University, Bloomington, IN, USA
PhyBin funding source(s)
Supported by a generous laboratory startup given by Indiana University.

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