PhyBin protocols

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PhyBin specifications

Information


Unique identifier OMICS_21685
Name PhyBin
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Version 0.3
Stability Stable
Source code URL http://hackage.haskell.org/package/phybin
Maintained Yes

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Maintainers


  • person_outline Irene Newton <>
  • person_outline Ryan Newton <>

Publication for PhyBin

PhyBin in pipeline

2016
PMCID: 4868114
PMID: 26893301
DOI: 10.1093/molbev/msw038

[…] among bipartitions weighted by bootstrap support, and for clustering leigh et al. use a version of the k-means algorithm and a spectral clustering method (; ). a conceptually similar method is phybin (), which can either identify genes with topologically identical trees or perform hierarchical clustering on the robinson-foulds distance matrix between every tree., statistical binning () […]


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PhyBin institution(s)
School of Informatics and Computing, Indiana University, Bloomington, IN, USA; Department of Biology, Indiana University, Bloomington, IN, USA
PhyBin funding source(s)
Supported by a generous laboratory startup given by Indiana University.

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