phyC specifications


Unique identifier OMICS_12695
Name phyC
Alternative name Phylogenetic tree Clustering
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Variant allele frequency, Edge matrix and edge length vector from reconstructed sub-clonal evolutionary trees
Output data Cluster assignments, Multidimensional scaling configuration of trees in clusters, Sub-clonal diversity of trees in clusters
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Advanced
Version 0.2.0
Stability Stable
Ape, igraph, ggplot2, grDevices, png, RColorBrewer
Source code URL
Maintained Yes


No version available



  • person_outline Yusuke Matsui

Publication for Phylogenetic tree Clustering

phyC institution(s)
Division of Systems Biology, Nagoya University Graduate School of Medicine, Nagoya, Japan; Division of Health Medical Computational Science, Health Intelligence Center, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan; Department of Otorhinolaryngology, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan; Department of Surgery, Kyushu University Beppu Hospital, Beppu, Japan; Laboratory of DNA Information Analysis, Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo, Japan

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