PhyDesign specifications

Information


Unique identifier OMICS_13194
Name PhyDesign
Interface Web user interface
Restrictions to use None
Input data PhyDesign reads aminoacid and DNA alignments and trees.
Input format NEXUS, FASTA, PHYLIP, NEWICK
Output data Spreadsheet outputs are offered as downloads: a compressed file containing individual rate files for each locus, and a single file containingrate site vectors for all loci. The second result provided is a graphical representation of phylogenetic informativeness and calculations of quantitative measures of informativeness. Two graphs are shown in the main section: the ultrametric tree and, aligned to it, the phylogenetic informativeness profiles.
Output format SVG
Programming languages Javascript, Perl
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Francesc López-Giráldez <>

Publication for PhyDesign

PhyDesign institution(s)
Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA

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