PhyDesign specifications

Unique identifier:
OMICS_13194
Restrictions to use:
None
Input format:
NEXUS, FASTA, PHYLIP, NEWICK
Output format:
SVG
Computer skills:
Basic
Maintained:
Yes
Interface:
Web user interface
Input data:
PhyDesign reads aminoacid and DNA alignments and trees.
Output data:
Spreadsheet outputs are offered as downloads: a compressed file containing individual rate files for each locus, and a single file containingrate site vectors for all loci. The second result provided is a graphical representation of phylogenetic informativeness and calculations of quantitative measures of informativeness. Two graphs are shown in the main section: the ultrametric tree and, aligned to it, the phylogenetic informativeness profiles.
Programming languages:
Javascript, Perl
Stability:
Stable

PhyDesign support

Documentation

Maintainer

  • Francesc López-Giráldez <>

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Publications

Institution(s)

Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA

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