PhyleasProg pipeline

PhyleasProg specifications

Information


Unique identifier OMICS_15385
Name PhyleasProg
Interface Web user interface
Restrictions to use None
Input data A list of Ensembl protein IDs and a list of species.
Programming languages Perl
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Géraldine Pascal <>

Publication for PhyleasProg

PhyleasProg citation

2015
PMCID: 4453067

[…] which is a well-established method for detecting partial gene conversion (posada 2002). the analysis was performed on the codon-based alignment performed by the muscle algorithm (edgar 2004) in the phyleasprog pipeline (busset et al. 2011) and permitted to the program to look for pair of sequences which are sufficiently similar to be suggestive of nonreciprocal transfer of genetic information […]

PhyleasProg institution(s)
INRA, UMR85, Physiologie de la Reproduction et des Comportements, Nouzilly, France; CNRS, UMR6175, Nouzilly, France; Université François Rabelais de Tours, Tours, France; IFCE, Nouzilly, France; INRA, SIGENAE, UR83 Recherches Avicoles, Nouzilly, France
PhyleasProg funding source(s)
Supported by MENRT PhD fellowship.

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