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PhyloBot specifications

Information


Unique identifier OMICS_15384
Name PhyloBot
Interface Web user interface
Restrictions to use None
Programming languages Python
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Victor Hanson-Smith <>

Information


Unique identifier OMICS_15384
Name PhyloBot
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements
psycopg2, wheel, Django, bioPython, gunicorn, Django-allauth, Django-ses, dendropy
Maintained Yes

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Maintainer


  • person_outline Victor Hanson-Smith <>

Publication for PhyloBot

PhyloBot in publication

PMCID: 5686408
PMID: 29133450
DOI: 10.1098/rsta.2016.0352

[…] sandaracinus amyloliticus and beijerinckia indica) in , resulting in 83 genomes (see electronic supplementary material, table s2). sequences belonging to clade b were then extracted and uploaded to phylobot []. sequences were analysed with muscle and msaprobs, and trees were drawn under the protcatlg and protgammalg models. the complete results are available at phylobot: […]


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PhyloBot institution(s)
Department of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA, USA
PhyloBot funding source(s)
This work was supported by NIH 1F32GM108299-01 (NRSA F32), NIH ROI GM37049 (R01), and an Amazon Web Services in Education Research Grant.

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