Phylocom pipeline

Phylocom specifications


Unique identifier OMICS_12479
Name Phylocom
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C
License BSD 2-clause “Simplified” License
Computer skills Advanced
Version 4.2
Stability Stable
Maintained Yes



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  • person_outline Campbell O. Webb <>

Publication for Phylocom

Phylocom citation

PMCID: 5233997

[…] tree was constructed for all the seed plants in the communities studied using phylomatic (version 3) with an apg iii derived mega-tree as the base tree525354. bladj block in the software phylocom (version 4.2, available online: was used to assign branch lengths to the obtained tree. for each quadrat, we calculated the phylogenetic index pd, […]

Phylocom institution(s)
Arnold Arboretum, Harvard University, Cambridge, MA, USA; Department of Integrative Biology, University of California, Berkeley, CA, USA
Phylocom funding source(s)
Phylocom development has been supported by grants 0212873 and 0515520 from the US NSF, by NSERC, by The Arnold Arboretum of Harvard University, and the Yale Institute of Biospheric Studies.

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