PhyloCSF pipeline

PhyloCSF specifications

Information


Unique identifier OMICS_05865
Name PhyloCSF
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Publication for PhyloCSF

PhyloCSF citation

2016
PMCID: 5100587

[…] monkey were also identified. transcripts >200nt were identified as lncrnas if they did not overlap with known genomic annotations from the ensembl database and no coding potential was assessed by phylocsf. next, the reads per kilo base of model per million base pairs sequenced (rpkm) was used to quantify the gene or lncrna expression levels (25)., embryo development genes were also obtained […]

PhyloCSF institution(s)
Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA

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