Phylodendron pipeline

Phylodendron specifications

Information


Unique identifier OMICS_04259
Name Phylodendron
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Version 0.8
Stability Stable
Maintained Yes

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Information


Unique identifier OMICS_04259
Name Phylodendron
Interface Web user interface
Restrictions to use None
Programming languages Java
Computer skills Basic
Version 0.8
Stability Stable
Maintained Yes

Phylodendron IN pipelines

 (3)
2016
PMCID: 5067624
PMID: 26915753
DOI: 10.1111/pbi.12532

[…] good matches. clustalw was used to estimate the distance between the proteins (list and e‐values available in table s6) and visualized using phylodendrum 0.8d (http://iubio.bio.indiana.edu/webapps/phylodendron/). the result is displayed in figure 6, with superimposed evolutionary distances as estimated by paterson et al. (2009). the tree shows a near complete agreement with the known evolution […]

2013
PMCID: 4222724
PMID: 24274142
DOI: 10.1186/1471-2180-13-267

[…] listed in additional file 1: table s2 was used to determine the ratios., protein sequences were retrieved from the ncbi database by using blastp searches. the clustal w software and the on-line tool phylodendron (http://iubio.bio.indiana.edu/treeapp/treeprint-form.html) were used for the multiple alignment and phylogenetic tree construction., w3-18-1 was shown previously to reduce fe(iii) oxide […]

2008
PMCID: 2253824
PMID: 18320024
DOI: 10.1371/journal.pone.0001737

[…] and cloning sites were subsequently checked by dna sequencing (lark technologies)., the phylogenetic tree was assembled by entering the sequences of the relevant genes into the embnet clustal w /phylodendron programmes on line (http://www.es.embnet.org/doc/phylodendron/clustal-form.html), human full length cdna clones for hsp90 protein 1 beta (hspcb) and hsp70 protein 8 (hspa8) were obtained […]

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