PhyloDraw protocols

View PhyloDraw computational protocol

PhyloDraw statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Tree visualization chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

PhyloDraw specifications

Information


Unique identifier OMICS_08883
Name PhyloDraw
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


Add your version

Publication for PhyloDraw

PhyloDraw in pipelines

 (5)
2014
PMCID: 3912489
PMID: 24492654
DOI: 10.1038/srep03964

[…] alignment tool (http://www.ebi.ac.uk/tools/clustalw2/index.html). the phylogenetic tree using full-length mates was constructed by the neighbour-joining method using phylip and displayed using phylodraw v0.82. expression study of osmate1 and osmate2 during biotic stress in rice has been carried out using publicly available microarray cel files in the geo database. geo database for virulent […]

2014
PMCID: 4164807
PMID: 25254246
DOI: 10.1155/2014/482463

[…] results., multiple sequence alignment was carried out on the selected sequences using clustalw [] and a phylogenetic tree was generated using neighbor-joining algorithm method and visualized by phylodraw []. after the phylogenetic tree had been constructed, a vertical cut-off line was generated at the node of the tree which divided the tree into two groups with one group containing […]

2013
PMCID: 3964250
PMID: 28324447
DOI: 10.1007/s13205-013-0141-5

[…] repeater), a tool based on the concept of ancestral relationship using the genetic distance (lin et al. ). this tool performs multiple sequence analysis and tree building based on clustalw, phylip (phylodraw) (choi et al. ), blast and psi-blast (altschul et al. ). a phylogenetic tree (phylogram) is developed to show the distances between protein sequences of human death receptors. we have also […]

2011
PMCID: 3163572
PMID: 21816042
DOI: 10.1186/1471-2164-12-395

[…] rooted using leptospira interrogans as outgroup species with the upgma method using phylip 3.67 through the mobyle platform (http://mobyle.pasteur.fr/). a phylogenetic tree was then plotted using phylodraw (http://www.bioinformatics.org/wiki/phylodraw)., all proteins from all four brachyspira genomes in the analysis were compared with the cog database []. bets were identified and cog classes […]

2010
PMCID: 2893185
PMID: 20525290
DOI: 10.1186/1746-1448-6-6

[…] w) of bioedit [], domain pattern [], homology modeling and analysis [] and visualized using weblab viewerlite []. phylogenetic tree was constructed using multiple alignments and visualized in phylodraw v.0.8 []., the nucleotide sequence of the sod gene has been deposited in ncbi under accession no. ay974247., the authors declare that they have no competing interests., bp and krs carried […]


To access a full list of citations, you will need to upgrade to our premium service.

PhyloDraw in publications

 (13)
PMCID: 5004975
PMID: 27575805
DOI: 10.1371/journal.pone.0161854

[…] the dendrogram was prepared using phylip 3.6 software [] with a modified nei and li distance, the upgma method and 1000 replicates of bootstrapping. the resulting unrooted tree was drawn using the phylodraw 0.8 program []. additionally, a maximum likelihood-based hybrid index (h) was calculated for each f. × bohemica individual from the population in the jasieniczanka river, […]

PMCID: 3848767
PMID: 24047207
DOI: 10.1186/1475-2875-12-333

[…] and were aligned with pfsm protein sequences obtained from plasmodb. homology-based blast search also identified sequences similar to lsm from p. falciparum. the phylogenetic tree was drawn using phylodraw, version 0.8 []., pfsmn (pfc1050w) and pfsm proteins (smb, smd1, smd2, smd3, sme, smf and smg) were cloned in ncoi and bamhi sites of pet41a + vector and expressed as a gst- fusion protein […]

PMCID: 3849582
PMID: 23984798
DOI: 10.1186/1471-2164-14-580

[…] between the fitch and neighbor-joining methods. for the fitch- margoliash method p is 2.0 and for neighbor-joining method it is 0.0. the resulting coefficient matrix file was displayed using the phylodraw graphics program []., this analysis used the disease/phenotype web-page gsa web tool[] using the page algorithm [] with the ce-combined-gs gene set file excluding gene sets containing […]

PMCID: 3964250
PMID: 28324447
DOI: 10.1007/s13205-013-0141-5

[…] repeater), a tool based on the concept of ancestral relationship using the genetic distance (lin et al. ). this tool performs multiple sequence analysis and tree building based on clustalw, phylip (phylodraw) (choi et al. ), blast and psi-blast (altschul et al. ). a phylogenetic tree (phylogram) is developed to show the distances between protein sequences of human death receptors. we have also […]

PMCID: 3532011
PMID: 23275731
DOI: 10.6026/97320630081260

[…] sequences among the templates. the obtained alignment files were stored as text file inorder to study the degree of conservation by tree prediction method., phylogenetic tree were predicted by phylodraw software [] in order to determine the relatedness of g6pd to other related among other species. phylodraw is a unified viewing tool for phylogenetic trees. phylodraw supports various kinds […]


To access a full list of publications, you will need to upgrade to our premium service.

PhyloDraw institution(s)
Department of Computer Science, Pusan National University, Pusan, Korea

PhyloDraw reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review PhyloDraw