PhyloDraw pipeline

PhyloDraw specifications

Information


Unique identifier OMICS_08883
Name PhyloDraw
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes

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Publication for PhyloDraw

PhyloDraw IN pipelines

 (4)
2014
PMCID: 3912489
PMID: 24492654
DOI: 10.1038/srep03964

[…] alignment tool (http://www.ebi.ac.uk/tools/clustalw2/index.html). the phylogenetic tree using full-length mates was constructed by the neighbour-joining method using phylip52 and displayed using phylodraw v0.8253. expression study of osmate1 and osmate2 during biotic stress in rice has been carried out using publicly available microarray cel files in the geo database. geo database […]

2014
PMCID: 4164807
PMID: 25254246
DOI: 10.1155/2014/482463

[…] results., multiple sequence alignment was carried out on the selected sequences using clustalw [14] and a phylogenetic tree was generated using neighbor-joining algorithm method and visualized by phylodraw [15]. after the phylogenetic tree had been constructed, a vertical cut-off line was generated at the node of the tree which divided the tree into two groups with one group containing […]

2013
PMCID: 3565871
PMID: 23351032
DOI: 10.1186/1471-230X-13-20

[…] sequences were subsequently clustered using neighbour (phylip version 3.68). the tree files from neighbour were applied with consense (phylip version 3.68) and the consensus tree was viewed using phylodraw., real-time quantitative (q) pcr was performed using a chromo4 four color real time pcr detection system with opticon monitor 3 software (bio-rad, hercules, usa). amplification […]

2007
PMCID: 1852557
PMID: 17391512
DOI: 10.1186/1471-2164-8-82

[…] with either prosite [31], or with blast-rps using pfam entries of the corresponding cdd database [73,74]. phylogenetic and molecular evolutionary analyses were performed with either clustal w and phylodraw (version 0.8; department of computer science, putan national university, korea [30], or the mega version 3 program [75]., rk performed gene fishing and annotation. ims carried […]

PhyloDraw institution(s)
Department of Computer Science, Pusan National University, Pusan, Korea

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