PhyloExplorer protocols

PhyloExplorer specifications


Unique identifier OMICS_04260
Name PhyloExplorer
Interface Web user interface
Restrictions to use None
Programming languages Python
Database management system MySQL
License CeCILL version 2.1
Computer skills Basic
Version 1.2
Stability Stable
Maintained Yes



  • person_outline Vincent Ranwez <>

Publication for PhyloExplorer

PhyloExplorer IN pipeline

PMCID: 3473239
PMID: 22839781
DOI: 10.1186/1741-7007-10-65

[…] led to 2,118 1:1 orthologous cdss, for which at least one contig from the nine transcriptomes was added to the initial set of seven species. these datasets were then filtered taxonomically using the phyloexplorer software [73], to keep only the 367 datasets that contained at least one turtle and one crocodile., the resulting 367 cds multifasta files were then aligned with macse [74] using […]

PhyloExplorer institution(s)
Institut des Sciences de l'Evolution (ISEM, UMR 5554 CNRS), Université Montpellier II, Montpellier, France; Equipe Méthodes et Algorithmes pour la Bioinformatique, LIRMM (UMR 5506 CNRS), Université Montpellier II, Montpellier, France

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