PHAST specifications


Unique identifier OMICS_01557
Name PHylogenetic Analysis with Space/Time models
Alternative name phastWeb
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Alignment, gene annotations, the assumed tree topology.
Input format GFF,BED,FA,MAF,
Output data Statistic plots for comparative and evolutionary genomics.
Operating system Unix/Linux, Mac OS, Windows
Programming languages C, C++, Shell (Bash)
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 1.4
Stability Stable
Maintained Yes


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  • person_outline PHAST <>
  • person_outline Adam Siepel <>

Additional information

An R interface of PHAST is available on:

PHAST articles

PHAST institution(s)
Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
PHAST funding source(s)
Supported by US National Institutes of Health grants R01-HG008161 and R35- GM127070.

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