Congruence is a broadly applied notion in evolutionary biology used to justify multigene phylogeny or phylogenomics, as well as in studies of coevolution, lateral gene transfer, and as evidence for common descent. Existing methods for identifying incongruence or heterogeneity…
Phylo-MCOA
Desktop

Phylo-MCOA

Explores the genomic tree space and detect outlier genes and species based on…

Explores the genomic tree space and detect outlier genes and species based on multiple co-inertia analysis (MCOA), which efficiently captures and compares the similarities in the phylogenetic…

Conclustador
Desktop

Conclustador

A congruence method that accommodates both very large numbers of genes and high…

A congruence method that accommodates both very large numbers of genes and high degrees of incongruence. Conclustador uses clustering algorithms to identify subsets of genes based on similarity of…

Clusterflock
Desktop

Clusterflock

An open source tool that can be used to discover horizontally transferred…

An open source tool that can be used to discover horizontally transferred genes, recombining areas of chromosomes, and the phylogenetic 'core' of a genome. Though we use it in an…

Concaterpillar
Desktop

Concaterpillar

A hierarchical clustering method based on likelihood-ratio testing that…

A hierarchical clustering method based on likelihood-ratio testing that identifies congruent loci for phylogenomic analysis. Concaterpillar also includes a test for shared relative evolutionary rates…

TreeTracker
Desktop

TreeTracker

Detects overrepresented clusters in a hierarchical tree. TreeTracker compares a…

Detects overrepresented clusters in a hierarchical tree. TreeTracker compares a hierarchical and a dichotomic non-hierarchical classification of elements, in order to find clusters in a hierarchical…

mILD
Desktop

mILD

Automates the process of making pairwise comparisons between large numbers of…

Automates the process of making pairwise comparisons between large numbers of phylogenetic datasets using the incongruence length difference (ILD) test. The application also implements strategies for…

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