PDA specifications

Unique identifier:
OMICS_13034
Interface:
Web user interface
Input data:
Phylogenetic tree, split network, area
License:
GNU General Public License version 3.0, GNU General Public License version 2.0
Version:
0.5
Maintained:
Yes
Name:
Phylogenetic Diversity Analyzer
Restrictions to use:
None
Input format:
NEWICK, NEXUS
Computer skills:
Basic
Stability:
Beta

PDA distribution

download

PDA specifications

Unique identifier:
OMICS_13034
Software type:
Package/Module
Restrictions to use:
None
Output data:
Optimal taxon or area sets, detailed information
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable
Source code URL:
http://www.cibiv.at/software/pda/download/pda-1.0.3/pda-1.0.3.tar.gz
Name:
Phylogenetic Diversity Analyzer
Interface:
Command line interface
Input data:
Phylogenetic tree, split network, information relevant for the conservation decision problem
Output format:
NEWICK, NEXUS
License:
GNU General Public License version 3.0, GNU General Public License version 2.0
Version:
1.0.3
Requirements:
Gurobi Optimizer
Maintained:
Yes

versioning

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PDA distribution

download

PDA support

Documentation

Maintainer

  • Bui Quang Minh <>
  • Bui Quang Minh <>

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Publications

Institution(s)

Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, University of Vienna, Medical University Vienna, Vienna, Austria; Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, Vienna, Austria; Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, UK; Department of Statistics, School of Biological Sciences, University of Auckland, Auckland, New Zealand; Department of Zoology, University of Otago, Dunedin, New Zealand; Theory and Applications of Algorithms, Faculty of Computer Science, University of Vienna, Vienna, Austria

Funding source(s)

This work was supported by the University of Vienna (Initiativkolleg I059-N), the Wiener Wissenschafts und Technologie Fond (WWTF) and the Austrian Science Fund - FWF (I760-B17).

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