Phylogenomic analysis software tools and databases

Phylogenies are important for addressing various biological questions such as relationships among species or genes, the origin and spread of viral infection and the demographic changes and migration patterns of species. The advancement of sequencing technologies has taken…

Phylogenomics steps

Most recent bioinformatics tools

Phylotyper
Desktop

Phylotyper

Allows subtype prediction from gene sequence data. Phylotyper is an in-silico…

Allows subtype prediction from gene sequence data. Phylotyper is an in-silico predictor that can assign unclassified genes subtypes from assembled whole genome sequencing (WGS) data. This software…

FlatNJ
Desktop

FlatNJ FlatNetJoining

Allows to analyze and visualize data. FlatNJ permits the estimation of pendant…

Allows to analyze and visualize data. FlatNJ permits the estimation of pendant edge lengths and allows internal vertices in the network to be labeled. It provides the option to produce a network that…

SuperQ
Desktop

SuperQ

Includes the option to switch off the scaling of the input trees and also…

Includes the option to switch off the scaling of the input trees and also provides alternatives to objective function. SuperQ represents a method to construct super-networks from partial trees. It…

SPECTRE
Desktop

SPECTRE Suite of PhylogEnetiC Tools for Reticulate Evolution

Provides a collection of open-source tools and resources for modelling,…

Provides a collection of open-source tools and resources for modelling, understanding and visualizing reticulate evolution based on planar split networks. SPECTRE enables bioinformaticians to test…

Most popular analytical software and databases

EvolView
Web

EvolView

A comprehensive web application for visualizing, annotating and managing…

A comprehensive web application for visualizing, annotating and managing phylogenetic trees. Evolview allows users to visualize phylogenetic trees in various formats, customize the trees through…

PhyloPat
Dataset

PhyloPat

Allows the complete Ensembl gene database to be queried using phylogenetic…

Allows the complete Ensembl gene database to be queried using phylogenetic patterns. PhyloPat offers the possibility of querying with binary phylogenetic patterns or regular expressions, or through a…

GapAdj
Desktop

GapAdj Gapped Adjacencies

A synteny-based method that is flexible enough to handle a model of evolution…

A synteny-based method that is flexible enough to handle a model of evolution involving whole genome duplication events, in addition to rearrangements, gene insertions, and losses. Ancestral…

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