Phylogenomic analysis software tools and databases

Phylogenomics steps

Phylogenies are important for addressing various biological questions such as relationships among species or genes, the origin and spread of viral infection and the demographic changes and migration patterns of species. The advancement of sequencing technologies has taken…

Phylogenomic analysis software tools and databases

Most Recent Tools

StarBEAST2
Desktop

StarBEAST2

Enables fuller use of available data and more accurate inference of species…

Enables fuller use of available data and more accurate inference of species tree topologies, divergence times, and substitution rates. StarBEAST2 is a more powerful and robust estimator of rate…

Species Network
Desktop

Species Network

Provides a general framework for Bayesian inference of reticulate evolution.…

Provides a general framework for Bayesian inference of reticulate evolution. Species Network is a Bayesian approach to jointly infer species networks and gene trees from multilocus sequence data.…

IsoSel
Desktop

IsoSel Isoform Selector

Selects alternative isoforms in the context of phylogenetic reconstruction.…

Selects alternative isoforms in the context of phylogenetic reconstruction. IsoSel is based on the SP score and allows to obtain datasets that are optimized for tree reconstruction. It is based on…

MPR
Desktop

MPR Most Parsimonious Reconciliation

Considers duplications, transfers and losses of genes. MPR yields a fast and…

Considers duplications, transfers and losses of genes. MPR yields a fast and exact algorithm to infer time consistent and most parsimonious reconciliations. It optimizes a parsimony criterion…

Most Popular Tools

EvolView
Web

EvolView

A comprehensive web application for visualizing, annotating and managing…

A comprehensive web application for visualizing, annotating and managing phylogenetic trees. Evolview allows users to visualize phylogenetic trees in various formats, customize the trees through…

PhyloPat
Dataset

PhyloPat

Allows the complete Ensembl gene database to be queried using phylogenetic…

Allows the complete Ensembl gene database to be queried using phylogenetic patterns. PhyloPat offers the possibility of querying with binary phylogenetic patterns or regular expressions, or through a…

GapAdj
Desktop

GapAdj Gapped Adjacencies

A synteny-based method that is flexible enough to handle a model of evolution…

A synteny-based method that is flexible enough to handle a model of evolution involving whole genome duplication events, in addition to rearrangements, gene insertions, and losses. Ancestral…

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