Phylogenetic analysis software tools and databases

Phylogenetics steps

Phylogenies are important for addressing various biological questions such as relationships among species or genes, the origin and spread of viral infection and the demographic changes and migration patterns of species. The advancement of sequencing technologies has taken…

Phylogenetic analysis software tools and databases

Most Recent Tools

Desktop app
Amalgamated… Amalgamated likelihood estimation

ALE Amalgamated likelihood estimation

Reconciles a sample of gene trees with a species tree. ALE is a probabilistic…

Reconciles a sample of gene trees with a species tree. ALE is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamated as a combination of clades observed in…

Desktop app
Species Informed… Species Informed Maximum A Posteriori Gene Tree…

SPIMAP Species Informed Maximum A Posteriori Gene Tree Reconstruction

Provides a phylogenetic reconstruction method specifically designed for…

Provides a phylogenetic reconstruction method specifically designed for reconstructing gene trees in the case of a known species tree. SPIMAP uses a Bayesian framework to model sequence evolution,…

Desktop app
PolytomySolverNAD PolytomySolverNAD

PolytomySolverNAD

Is dedicated to the polytomy refinement problem. PolytomySolverNAD corrects a…

Is dedicated to the polytomy refinement problem. PolytomySolverNAD corrects a NAD (Non-Apparent Duplication) of the gene tree by applying multifurcation, given a rooted binary gene tree and species…

TimeTree TimeTree

TimeTree

Offers a public knowledge-base for information on the tree-of-life and its…

Offers a public knowledge-base for information on the tree-of-life and its evolutionary timescale. TimeTree is a web-based resource for researchers and educators from all fields of science to assist…

Most Popular Tools

PhyloPat PhyloPat

PhyloPat

Allows the complete Ensembl gene database to be queried using phylogenetic…

Allows the complete Ensembl gene database to be queried using phylogenetic patterns. PhyloPat offers the possibility of querying with binary phylogenetic patterns or regular expressions, or through a…

Desktop app
Gapped Adjacencies Gapped Adjacencies

GapAdj Gapped Adjacencies

A synteny-based method that is flexible enough to handle a model of evolution…

A synteny-based method that is flexible enough to handle a model of evolution involving whole genome duplication events, in addition to rearrangements, gene insertions, and losses. Ancestral…

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.