Phylogenomic analysis software tools and databases

Phylogenomics steps

Phylogenies are important for addressing various biological questions such as relationships among species or genes, the origin and spread of viral infection and the demographic changes and migration patterns of species. The advancement of sequencing technologies has taken…

Phylogenomic analysis software tools and databases

Most Recent Tools

STELLS2
Desktop

STELLS2

Computes the gene tree probability. STELLS2 is usually more accurate than…

Computes the gene tree probability. STELLS2 is usually more accurate than several existing methods when there is one allele per species. It outperforms these methods significantly when there are…

POY
Desktop

POY

Supports multiple kinds of data (e.g. morphology, nucleotides, genes and gene…

Supports multiple kinds of data (e.g. morphology, nucleotides, genes and gene regions, chromosomes, whole genomes, etc). POY is a phylogenetic analysis program that can perform true sequence…

FastME
Desktop
Web

FastME

Provides distance algorithms to infer phylogenies. FastME is based on balanced…

Provides distance algorithms to infer phylogenies. FastME is based on balanced minimum evolution, which is the very principle of Neighbor Joining (NJ). FastME improves over NJ by performing…

VICTOR
Web

VICTOR Virus Classification and Tree Building Online Resource

Compares bacterial and archaeal viruses using their genome or proteome…

Compares bacterial and archaeal viruses using their genome or proteome sequences. The VICTOR results include phylogenomic trees inferred using the Genome-BLAST Distance Phylogeny method (GBDP), with…

Most Popular Tools

PhyloPat
Data

PhyloPat

Allows the complete Ensembl gene database to be queried using phylogenetic…

Allows the complete Ensembl gene database to be queried using phylogenetic patterns. PhyloPat offers the possibility of querying with binary phylogenetic patterns or regular expressions, or through a…

GapAdj
Desktop

GapAdj Gapped Adjacencies

A synteny-based method that is flexible enough to handle a model of evolution…

A synteny-based method that is flexible enough to handle a model of evolution involving whole genome duplication events, in addition to rearrangements, gene insertions, and losses. Ancestral…

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