Phylogenomic analysis software tools and databases

Phylogenies are important for addressing various biological questions such as relationships among species or genes, the origin and spread of viral infection and the demographic changes and migration patterns of species. The advancement of sequencing technologies has taken…

Phylogenomics steps

Most recent bioinformatics tools

HyDe
Desktop

HyDe Hybridization Detection

Allows detection of hybridization using phylogenetic invariants. HyDe provides…

Allows detection of hybridization using phylogenetic invariants. HyDe provides methods to detect hybridization at both the population and individual levels and other features to discover individual…

DendroUPGMA
Web

DendroUPGMA Dendrogram Unweighted Pair Group Method with Arithmetic mean

Allows user to create a dendrogram from a distance matrix, a set of variables…

Allows user to create a dendrogram from a distance matrix, a set of variables or a similarity matrix. DendroUPGMA can realize different actions such as: computation of a a similarity matrix (only for…

SPAGeDi
Desktop

SPAGeDi Spatial Pattern Analysis of Genetic Diversity

Estimates genetic distances between populations or relatedness coefficients…

Estimates genetic distances between populations or relatedness coefficients between individuals using data from codominant genetic markers. SPAGeDi characterizes association between genetic and…

vConTACT
Desktop

vConTACT Viral CONTigs Automatic Clustering and Taxonomy

Allows classification of double-stranded DNA viruses that infect Archaea and…

Allows classification of double-stranded DNA viruses that infect Archaea and Bacteria. vConTACT analyses are based on gene sharing network methods. It displays the extent of shared genes between…

Most popular analytical software and databases

EvolView
Web

EvolView

A comprehensive web application for visualizing, annotating and managing…

A comprehensive web application for visualizing, annotating and managing phylogenetic trees. Evolview allows users to visualize phylogenetic trees in various formats, customize the trees through…

PhyloPat
Dataset

PhyloPat

Allows the complete Ensembl gene database to be queried using phylogenetic…

Allows the complete Ensembl gene database to be queried using phylogenetic patterns. PhyloPat offers the possibility of querying with binary phylogenetic patterns or regular expressions, or through a…

GapAdj
Desktop

GapAdj Gapped Adjacencies

A synteny-based method that is flexible enough to handle a model of evolution…

A synteny-based method that is flexible enough to handle a model of evolution involving whole genome duplication events, in addition to rearrangements, gene insertions, and losses. Ancestral…

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.