PhyloGeoViz protocols

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PhyloGeoViz statistics

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PhyloGeoViz specifications

Information


Unique identifier OMICS_08648
Name PhyloGeoViz
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.4.5
Stability Stable
Maintained Yes

Maintainer


  • person_outline Yi-Hsin E. Tsai <>

Publication for PhyloGeoViz

PhyloGeoViz in pipelines

 (2)
2013
PMCID: 3568074
PMID: 23409167
DOI: 10.1371/journal.pone.0056288

[…] were performed with the compare2trees software available at http://www.mas.ncl.ac.uk/~ntmwn/compare2trees/index.html. the map with the location and frequency of samples was obtained using phylogeoviz v2.4.5 and google maps (google inc., mountain view, ca)., basic sequence statistics and mismatch distributions were estimated using the dnasp ver. 5.10 software . relevant population […]

2012
PMCID: 3356766
PMID: 22645491
DOI: 10.1100/2012/975930

[…] using ntsyspc v2.10q software package [] to visualize the grouping populations. finally, haplotype frequencies for each mitochondrial gene were geographically depicted for each population using phylogeoviz v 2.4.4 []., genetic diversity was quantified as the mean number of observed alleles per locus (a), effective number of alleles per locus (n e), the observed heterozygosity (h o) […]


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PhyloGeoViz in publications

 (3)
PMCID: 3835867
PMID: 24228694
DOI: 10.1186/1742-9994-10-70

[…] of the members of the brown lemur complex estimated in markolf et al. [] based on a genotype matrix of three nuclear genetic loci was plotted on a map of madagascar, using the online platform phylogeoviz []. phylogeoviz was originally designed to plot haplotype or allele frequencies as proportions of pies on a map. however, geo-referenced pie charts can also be constructed using […]

PMCID: 3568074
PMID: 23409167
DOI: 10.1371/journal.pone.0056288

[…] were performed with the compare2trees software available at http://www.mas.ncl.ac.uk/~ntmwn/compare2trees/index.html. the map with the location and frequency of samples was obtained using phylogeoviz v2.4.5 and google maps (google inc., mountain view, ca)., basic sequence statistics and mismatch distributions were estimated using the dnasp ver. 5.10 software . relevant population […]

PMCID: 3356766
PMID: 22645491
DOI: 10.1100/2012/975930

[…] using ntsyspc v2.10q software package [] to visualize the grouping populations. finally, haplotype frequencies for each mitochondrial gene were geographically depicted for each population using phylogeoviz v 2.4.4 []., genetic diversity was quantified as the mean number of observed alleles per locus (a), effective number of alleles per locus (n e), the observed heterozygosity (h o) […]


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PhyloGeoViz institution(s)
Department of Biology, Duke University, Durham, NC, USA

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