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PhyloGeoViz specifications


Unique identifier OMICS_08648
Name PhyloGeoViz
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.4.5
Stability Stable
Maintained Yes


  • person_outline Yi-Hsin E. Tsai

Publication for PhyloGeoViz

PhyloGeoViz citations


Post glacial phylogeography and evolution of a wide ranging highly exploited keystone forest tree, eastern white pine (Pinus strobus) in North America: single refugium, multiple routes

BMC Evol Biol
PMCID: 4774161
PMID: 26936598
DOI: 10.1186/s12862-016-0624-1
call_split See protocol

[…] hic distribution of chloroplast haplotypes to infer genetic lineages and post-glacial northward migration of eastern white pine. The geographic distribution of the haplotype data was visualized using PhyloGeoViz []. The distribution of these haplotypes across the species’ range was combined with previous information on fossil pollen occurrence [] to formulate possible recolonization scenarios, inc […]


The history of introduction of the African baobab (Adansonia digitata, Malvaceae: Bombacoideae) in the Indian subcontinent

R Soc Open Sci
PMCID: 4593694
PMID: 26473060
DOI: 10.1098/rsos.150370

[…] s at the selected value of K were combined using Clumpp v. 1.1.2 [], and plotted graphically using Distruct v. 1.1 []. Cluster assignment of individuals and populations was visualized spatially using PhyloGeoViz [].The statistical significance of spatial genetic clustering identified in the Structure analysis, for selected values of K, was tested using analysis of molecular variance (AMOVA) [] per […]


Phylogeographic analysis of the true lemurs (genus Eulemur) underlines the role of river catchments for the evolution of micro endemism in Madagascar

Front Zool
PMCID: 3835867
PMID: 24228694
DOI: 10.1186/1742-9994-10-70
call_split See protocol

[…] ructure of the members of the brown lemur complex estimated in Markolf et al. [] based on a genotype matrix of three nuclear genetic loci was plotted on a map of Madagascar, using the online platform PhyloGeoViz []. PhyloGeoViz was originally designed to plot haplotype or allele frequencies as proportions of pies on a map. However, geo-referenced pie charts can also be constructed using assignment […]


New Insights into the Phylogeny and Worldwide Dispersion of Two Closely Related Nematode Species, Bursaphelenchus xylophilus and Bursaphelenchus mucronatus

PLoS One
PMCID: 3568074
PMID: 23409167
DOI: 10.1371/journal.pone.0056288
call_split See protocol

[…] comparisons were performed with the Compare2Trees software available at The map with the location and frequency of samples was obtained using PhyloGeoViz v2.4.5 and Google Maps (Google Inc., Mountain View, CA). […]


A Genetic Approach to Spanish Populations of the Threatened Austropotamobius italicus Located at Three Different Scenarios

Sci World J
PMCID: 3356766
PMID: 22645491
DOI: 10.1100/2012/975930
call_split See protocol

[…] rming using NTSYSpc v2.10q software package [] to visualize the grouping populations. Finally, haplotype frequencies for each mitochondrial gene were geographically depicted for each population using PhyloGeoViz v 2.4.4 []. […]


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PhyloGeoViz institution(s)
Department of Biology, Duke University, Durham, NC, USA

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