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Protocols

PhyloGeoViz specifications

Information


Unique identifier OMICS_08648
Name PhyloGeoViz
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.4.5
Stability Stable
Maintained Yes

Maintainer


  • person_outline Yi-Hsin E. Tsai

Publication for PhyloGeoViz

PhyloGeoViz citations

 (5)
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Post glacial phylogeography and evolution of a wide ranging highly exploited keystone forest tree, eastern white pine (Pinus strobus) in North America: single refugium, multiple routes

2016
BMC Evol Biol
PMCID: 4774161
PMID: 26936598
DOI: 10.1186/s12862-016-0624-1
call_split See protocol

[…] hic distribution of chloroplast haplotypes to infer genetic lineages and post-glacial northward migration of eastern white pine. The geographic distribution of the haplotype data was visualized using PhyloGeoViz []. The distribution of these haplotypes across the species’ range was combined with previous information on fossil pollen occurrence [] to formulate possible recolonization scenarios, inc […]

library_books

The history of introduction of the African baobab (Adansonia digitata, Malvaceae: Bombacoideae) in the Indian subcontinent

2015
R Soc Open Sci
PMCID: 4593694
PMID: 26473060
DOI: 10.1098/rsos.150370

[…] s at the selected value of K were combined using Clumpp v. 1.1.2 [], and plotted graphically using Distruct v. 1.1 []. Cluster assignment of individuals and populations was visualized spatially using PhyloGeoViz [].The statistical significance of spatial genetic clustering identified in the Structure analysis, for selected values of K, was tested using analysis of molecular variance (AMOVA) [] per […]

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Phylogeographic analysis of the true lemurs (genus Eulemur) underlines the role of river catchments for the evolution of micro endemism in Madagascar

2013
Front Zool
PMCID: 3835867
PMID: 24228694
DOI: 10.1186/1742-9994-10-70
call_split See protocol

[…] ructure of the members of the brown lemur complex estimated in Markolf et al. [] based on a genotype matrix of three nuclear genetic loci was plotted on a map of Madagascar, using the online platform PhyloGeoViz []. PhyloGeoViz was originally designed to plot haplotype or allele frequencies as proportions of pies on a map. However, geo-referenced pie charts can also be constructed using assignment […]

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New Insights into the Phylogeny and Worldwide Dispersion of Two Closely Related Nematode Species, Bursaphelenchus xylophilus and Bursaphelenchus mucronatus

2013
PLoS One
PMCID: 3568074
PMID: 23409167
DOI: 10.1371/journal.pone.0056288
call_split See protocol

[…] comparisons were performed with the Compare2Trees software available at http://www.mas.ncl.ac.uk/~ntmwn/compare2trees/index.html. The map with the location and frequency of samples was obtained using PhyloGeoViz v2.4.5 and Google Maps (Google Inc., Mountain View, CA). […]

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A Genetic Approach to Spanish Populations of the Threatened Austropotamobius italicus Located at Three Different Scenarios

2012
Sci World J
PMCID: 3356766
PMID: 22645491
DOI: 10.1100/2012/975930
call_split See protocol

[…] rming using NTSYSpc v2.10q software package [] to visualize the grouping populations. Finally, haplotype frequencies for each mitochondrial gene were geographically depicted for each population using PhyloGeoViz v 2.4.4 []. […]

Citations

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PhyloGeoViz institution(s)
Department of Biology, Duke University, Durham, NC, USA

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