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Gives access to catalogues of gene phylogenies (phylomes). PhylomeDB provides alignments and trees enriched with relevant annotations, as well as prediction of orthology and paralogy relationships, all of which can be searched, downloaded or visualized interactively. The database follows an approach that is both gene-centric and genome-wide. PhylomeDB approach has been proven useful in the annotation and analysis of newly sequenced genomes.

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PhylomeDB classification

PhylomeDB specifications

Restrictions to use:
Data access:
File download, Browse, Application programming interface

PhylomeDB support


  • Toni Gabaldón <>

Additional information

Manual: http://phylomedb.org/help1


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Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Barcelona, Spain; Universitat Pompeu Fabra (UPF), Barcelona, Spain; Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain

Funding source(s)

Supported by Spanish ministry of Economy and Competitiveness [BIO2012-37161], a Grant from the Qatar National Research Fund [NPRP 5-298-3-086], the European Research Council under the European Union’s Seventh Framework Programme [FP/2007-2013/ERC and ERC- 2012-StG-310325], Juan de La Cierva postdoctoral program and La Caixa-CRG International Fellowship Program.

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