Phylometrics specifications

Information


Unique identifier OMICS_33293
Name Phylometrics
Interface Web user interface
Restrictions to use None
Input format FASTA,Genbank
Output data Some phylogenetic trees and its corresponding report.
Output format SVG,JPG,NEWICK,PHYLIP
Programming languages Javascript, Perl, PHP
Database management system MySQL
License GNU General Public License version 3.0
Computer skills Basic
Stability Stable
Maintained No

Maintainer


This tool is not available anymore.

Publication for Phylometrics

Phylometrics citation

library_books

Phylometrics: a pipeline for inferring phylogenetic trees from a sequence relationship network perspective

2010
BMC Bioinformatics
PMCID: 3026365
PMID: 20946601
DOI: 10.1186/1471-2105-11-S6-S18

[…] contribute to its analysis.Here we introduce a web application, Phylometrics, which automates many key tasks for DNA sequence analysis in a high-throughput method. Instead of single BLASTN inquiries, Phylometrics automatically analyzes multiple BLASTN results, cross-comparing each BLASTN result against others within seconds. A graphical tool for mining these sequence relationships is also provided […]

Phylometrics institution(s)
Department of Biological Sciences, San José State University, San José, CA, USA
Phylometrics funding source(s)
Supported by NIH Grant #SC3GM082291 and the Howard Hughes Medical Institute Science Education Grant # 52006312.

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