PhyloNet pipeline

PhyloNet specifications

Information


Unique identifier OMICS_06050
Name PhyloNet
Alternative name Phylogenetic Networks Toolkit
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU General Public License version 2.0
Computer skills Advanced
Version 3.6.7
Stability Stable
Maintained Yes

Subtool


  • SNAPP

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Versioning


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Maintainer


  • person_outline Luay Nakhleh <>

Additional information


https://wiki.rice.edu/confluence/display/PHYLONET/PhyloNet+3+General+Overview

Publications for Phylogenetic Networks Toolkit

PhyloNet citation

2010
PMCID: 2829038

[…] between multifurcating trees can also be calculated using horizstory., lattrans [19] uses a time constraint to ensure that no cycles are introduced when identifying the minimum spr distance., phylonet's [20] hgt is based on an extended implementation of the riata-hgt algorithm [21] rooted, unrooted, bifurcating and multifurcating trees can be used with phylonet., sprdist [12] uses integer […]

PhyloNet institution(s)
Computer Science, Rice University, Houston, TX, USA; Museum of New Zealand Te Papa Tongarewa, Wellington, New Zealand; BioSciences, Rice University, Houston, TX, USA
PhyloNet funding source(s)
Supported by DBI1355998 and CCF-1302179 from the National Science Foundation.

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