PhyloNetworks statistics

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PhyloNetworks specifications

Information


Unique identifier OMICS_25277
Name PhyloNetworks
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Julia
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.6.0
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Claudia Solis-Lemus

Additional information


https://github.com/crsl4/PhyloNetworks.jl/wiki

Publications for PhyloNetworks

PhyloNetworks citation

library_books

Genomic Signatures of Reinforcement

2018
Genes
PMCID: 5924533
PMID: 29614048
DOI: 10.3390/genes9040191

[…] [] and admixture [] deduce ancestry from population variation data. summary statistics such as patterson’s d [] and f4 [] use phylogenomic inference, and phylogenetic network methods, such as phylonetworks [], test alternative models of reticulate evolution to determine the best fit given a distribution of gene trees (a). furthermore, demographic model choice methods can infer a history […]


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PhyloNetworks institution(s)
Department of Statistics, University of Wisconsin, Madison, WI, USA; Unite Mixte de Recherche Mathematiques et Informatique Appliquees (MIA - Paris), AgroParisTech, Institut National de la Recherche Agronomique (INRA), Universite Paris-Saclay, Paris, France; Unite de Recherche Mathematiques et Informatique Appliquees du Genome a l’Environnement (MaIAGE), Institut National de la Recherche Agronomique (INRA), Universite Paris-Saclay, Jouy-en-Josas, France; Department of Botany, University of Wisconsin, Madison, WI, USA
PhyloNetworks funding source(s)
Supported by the National Science Foundation (grant numbers DEB 0936214, DEB 1354793), a Vilas Associate award from the University of Wisconsin-Madison, and a grant from the Franco-American Fulbright Commission.

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