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|Interface||Web user interface|
|Restrictions to use||None|
|Input data||Phylogeny file|
- Documentation: http://www.ibi.vu.nl/programs/phylopars/help/methodology.pdf
- person_outline Jorn Bruggerman
Publication for PhyloPars
The Most Developmentally Truncated Fishes Show Extensive Hox Gene Loss and Miniaturized Genomes
[…] the directionality of changes in repeat content and genome sizes, the time-calibrated phylogeny () was used to reconstruct ancestral states at each internal node. This was done with the ML algorithm “phylopars” implemented in the R package Rphylopars (), assuming a Brownian Motion model of trait evolution. Ancestral state reconstruction was performed separately for numbers of DNA transposons, LINE […]
Rapid maximum likelihood ancestral state reconstruction of continuous characters: A rerooting‐free algorithm
[…] rsively traversing the tree in preorder (root to tips) to compute quantities of interest at each internal node. The algorithm is implemented in the R package Rphylopars in the functions anc.recon and phylopars (Goolsby, Bruggeman, & Ané, ). […]
Predicting climate change effects on wetland ecosystem services using species distribution modeling and plant functional traits
[…] e LEDA traitbase (Kleyer et al. ; Electronic Supplementary Material, Table S3). Gaps in trait data were filled with estimates based on phylogenetic relationships (generated with phyloGenerator) using PhyloPars (Bruggeman et al. ). This approach resulted in complete datasets for the continuous traits: specific leaf area (SLA), canopy height (CH), and root depth (RD) (Table ). SLA is a good positive […]
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