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PhyloPars specifications


Unique identifier OMICS_13168
Name PhyloPars
Interface Web user interface
Restrictions to use None
Input data Phylogeny file
Computer skills Basic
Stability Stable
Maintained Yes



  • person_outline Jorn Bruggerman <>

Publication for PhyloPars

PhyloPars in publications

PMCID: 5906920
PMID: 29684203
DOI: 10.1093/gbe/evy058

[…] directionality of changes in repeat content and genome sizes, the time-calibrated phylogeny () was used to reconstruct ancestral states at each internal node. this was done with the ml algorithm “phylopars” implemented in the r package rphylopars (), assuming a brownian motion model of trait evolution. ancestral state reconstruction was performed separately for numbers of dna transposons, […]

PMCID: 4288999
PMID: 25576286
DOI: 10.1007/s13280-014-0593-9

[…] leda traitbase (kleyer et al. ; electronic supplementary material, table s3). gaps in trait data were filled with estimates based on phylogenetic relationships (generated with phylogenerator) using phylopars (bruggeman et al. ). this approach resulted in complete datasets for the continuous traits: specific leaf area (sla), canopy height (ch), and root depth (rd) (table ). sla is a good […]

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PhyloPars institution(s)
Department of Theoretical Biology, Faculty of Earth & Life Sciences, Amsterdam, Netherlands; Centre for Integrative Bioinformatics, VU University Amsterdam, Amsterdam, Netherlands
PhyloPars funding source(s)
This work was supported by the Computational Life Sciences program of the Netherlands, Organisation for Scientific Research (635.100.009) and by the European Commission FP6 Programme.

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