PhyloPat specifications

Information


Unique identifier OMICS_08064
Name PhyloPat
Restrictions to use None
Maintained No

Maintainer


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Publications for PhyloPat

PhyloPat citations

 (2)
library_books

ProteinHistorian: Tools for the Comparative Analysis of Eukaryote Protein Origin

2012
PLoS Comput Biol
PMCID: 3386163
PMID: 22761559
DOI: 10.1371/journal.pcbi.1002567

[…] r protein age enrichment analysis and visualization. However, there are other web servers that perform complementary phylogenetic analyses based on existing protein family databases. For example, the PhyloPat server performs regular expression searches on phylogenetic profiles. Similarly, PhyloPro allows a user to visualize the evolutionary trajectory of a set of proteins, such as a metabolic pa […]

library_books

Similarly Strong Purifying Selection Acts on Human Disease Genes of All Evolutionary Ages

2009
Genome Biol Evol
PMCID: 2817408
PMID: 20333184
DOI: 10.1093/gbe/evp013

[…] We estimated the age of each human gene based on its phylogenetic profile obtained from Phylopat database (, ). Phylopat algorithm used the ortholog of each protein predicted by Ensembl compara database to construct a phylogenetic profile for each protein based on the presence/absence pa […]

PhyloPat institution(s)
Computational Drug Discovery (CDD), CMBI, NCMLS, Radboud University Nijmegen Medical Centre, Nijmegen, Netherlands; Department of Molecular Design and Informatics, Schering-Plough, Netherlands
PhyloPat funding source(s)
This work was part of BioRange SP3.2.2 project of the Netherlands Bioinformatics Centre (NBIC), and was supported financially by Schering-Plough corporation.

PhyloPat review

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Anonymous user #1085

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Dataset
Very useful tool!