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Allows the complete Ensembl gene database to be queried using phylogenetic patterns. PhyloPat offers the possibility of querying with binary phylogenetic patterns or regular expressions, or through a phylogenetic tree of the 39 included species. Users can also input a list of Ensembl, EMBL, EntrezGene or HGNC IDs to check which phylogenetic lineage any gene belongs to.

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Tim Hulsen

Very useful tool!

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PhyloPat classification

PhyloPat specifications

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None

PhyloPat support

Maintainer

Credits

Publications

  • (Hulsen et al., 2009) PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhood. Nucleic acids research.
    PMID: 18832367
  • (Hulsen et al., 2006) PhyloPat: phylogenetic pattern analysis of eukaryotic genes. BMC bioinformatics.
    PMID: 16948844

Institution(s)

Computational Drug Discovery (CDD), CMBI, NCMLS, Radboud University Nijmegen Medical Centre, PO Box 9101, 6500 HB Nijmegen and Department of Molecular Design and Informatics, Schering-Plough, Molenstraat 110, 5340 BH Oss, The Netherlands

Funding source(s)

This work was part of BioRange SP3.2.2 project of the Netherlands Bioinformatics Centre (NBIC), and was supported financially by Schering-Plough corporation.

Link to literature

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