Allows the complete Ensembl gene database to be queried using phylogenetic patterns. PhyloPat offers the possibility of querying with binary phylogenetic patterns or regular expressions, or through a phylogenetic tree of the 39 included species. Users can also input a list of Ensembl, EMBL, EntrezGene or HGNC IDs to check which phylogenetic lineage any gene belongs to.

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Tim Hulsen's avatar image

Tim Hulsen

Very useful tool!

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PhyloPat specifications

Restrictions to use:
None

Publications

  • (Hulsen et al., 2009) PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhood. Nucleic acids research.
    PMID: 18832367
  • (Hulsen et al., 2006) PhyloPat: phylogenetic pattern analysis of eukaryotic genes. BMC bioinformatics.
    PMID: 16948844

PhyloPat support

Maintainer

Credits

Institution(s)

Computational Drug Discovery (CDD), CMBI, NCMLS, Radboud University Nijmegen Medical Centre, PO Box 9101, 6500 HB Nijmegen and Department of Molecular Design and Informatics, Schering-Plough, Molenstraat 110, 5340 BH Oss, The Netherlands

Funding source(s)

This work was part of BioRange SP3.2.2 project of the Netherlands Bioinformatics Centre (NBIC), and was supported financially by Schering-Plough corporation.

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