Main logo
?
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

PhyloPhlAn | Phylogenetic and taxonomic placement of microbes

A computational pipeline for reconstructing highly accurate and resolved phylogenetic trees based on whole-genome sequence information.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community
Sort by:

1 user review

star_border star_border star_border star_border star_border
star star star star star

1 user review

star_border star_border star_border star_border star_border
star star star star star
nick_youngblut's avatar image nick_youngblut's country flag

nick_youngblut

star_border star_border star_border star_border star_border
star star star star star

It is not available via conda. It requires usearch (and vsearch cannot just be substituted). Also, it requires running the phylophlan.py within the same directory *and* all of your files MUST be in the ./input/ directory within the main directory. In other words, phylophlan is a pain to setup and use.

PhyloPhlAn forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

PhyloPhlAn classification

PhyloPhlAn specifications

Unique identifier:
OMICS_01525
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes

PhyloPhlAn distribution

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

PhyloPhlAn support

Documentation

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Biostatistics Department, Harvard School of Public Health, Boston, MA, USA

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.