Phyloscan specifications


Unique identifier OMICS_10965
Name Phyloscan
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.0
Stability Stable
Maintained No


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Publications for Phyloscan

Phyloscan in publications

PMCID: 5014158
PMID: 27436282
DOI: 10.1093/jxb/erw275

[…] be categorized into three major classes: (1) methods based on position weight matrix (pwm), e.g. trap (), match (), and signal scan (); (2) phylogenetic footprinting methods, e.g. footprinter (), phyloscan (), and phyme (); and (3) standard motif-finding algorithms, e.g. gibbs sampling (), meme (), alignace (), ymf (), and weeder (). it is a common practice to combine different approaches […]

PMCID: 3842916
PMID: 24312270
DOI: 10.1371/journal.pone.0081155

[…] than the g20 peptide. it was therefore chosen as the basis for further investigations., in an extension of the epitope scanning we compared peptides homologous with the human g20c peptide, a “phyloscan”. certain me and bd samples gave high igg and igm antibody reactions to hsp60 peptides from leishmania and schistosoma. like plasmodium, these microbes are rare in sweden. the highly […]

PMCID: 2099490
PMID: 18047721
DOI: 10.1186/1471-2105-8-S7-S21

[…] 90% of known transcription factor binding sites. they claimed that this algorithm can be applied to much larger genome such as the human genome., carmack et al. [] developed a scanning algorithm, phyloscan, which combines evidence from matching sites found in orthologous data from several related species with evidence from multiple sites within an intergenic region, to better detect regulons. […]

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Phyloscan institution(s)
Wadsworth Center, New York State Department of Health, Empire State Plaza, Albany, NY, USA; Department of Computer Science, Rensselaer Polytechnic Institute, Troy, NY, USA
Phyloscan funding source(s)
National Science Foundation (CCF0914739); Department of Energy (DE-SC000592); National Institutes of Health (5K25HG003291); Wadsworth Center Bioinformatics Core

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