Phylotastic

[…] kedly (absolute(LG–HCN)/HCN > 0.7). In our analyses, we controlled for phylogeny by fitting a Phylogenetic Generalized Linear Model with the R Package ‘Caper’ []. The phylogeny was obtained using the Phylotastic Web Service (https://github.com/phylotastic/phylo_services_docs/blob/master/ServiceDescription/PhyloServicesDescription.md), which extracts a Supertree from openTree []. All branch lengths […]

[…] al units for ancestral range analyses (; Töpel et al., this issue); the estimation of rates of migration, speciation, and extinction; extracting subtrees from global species-level chronograms (http://phylotastic.org); among numerous other macroevolutionary and biogeographical analyses, some of which are exemplified here for the palms.Our approach for inferring phylogenies first produces a backbone […]

[…] voBio 2011 [], the W3C Workshop on Data and Services Integration [], Translational Medicine Conference at AMIA 2012 [,] and IEEE International Conference on Bioinformatics and Biomedicine []. Recent "PhyloTastic" hackathons [] have also developed resources to promote the reuse of published trees and underlying metadata.Other prior art with regard to the Semantic Web-ready definition of phylogeny-r […]

[…] The correct spellings are Helianthus annuus and Homo sapiens. Another approach uses the Taxonomic Name Resolution Service via the Taxosaurus API http:// taxosaurus.org/ developed by iPLant and the Phylotastic organization. In this example is a list of species names, some of which are misspelled, and then call the API with the tnrs function. mynames <- c ( "Helianthus annuus" ٫ "Pinus contort […]