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Phylotastic specifications
Information
| Unique identifier | OMICS_23509 |
|---|---|
| Name | Phylotastic |
| Interface | Web user interface |
| Restrictions to use | None |
| Input data | An url, a document or a taxon. |
| Input format | TXT,ZIP,PDF |
| Output data | A tree. |
| Programming languages | Java, Javascript, Perl, PHP, Python, R, SPARQL, awk |
| License | BSD 3-clause “New” or “Revised” License, GNU General Public License version 3.0, MIT License |
| Computer skills | Basic |
| Stability | Stable |
| Maintained | No |
Documentation
- Video: https://youtu.be/S7rGIlFo03o
Maintainers
Additional information
Publications for Phylotastic
Phylotastic: improving access to tree-of-life knowledge with flexible, on-the-fly delivery of trees.
Phylotastic citations
(4)Variation in recombination frequency and distribution across eukaryotes: patterns and processes
[…] kedly (absolute(LG–HCN)/HCN > 0.7). In our analyses, we controlled for phylogeny by fitting a Phylogenetic Generalized Linear Model with the R Package ‘Caper’ []. The phylogeny was obtained using the Phylotastic Web Service (https://github.com/phylotastic/phylo_services_docs/blob/master/ServiceDescription/PhyloServicesDescription.md), which extracts a Supertree from openTree []. All branch lengths […]
Toward a Self Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa
[…] al units for ancestral range analyses (; Töpel et al., this issue); the estimation of rates of migration, speciation, and extinction; extracting subtrees from global species-level chronograms (http://phylotastic.org); among numerous other macroevolutionary and biogeographical analyses, some of which are exemplified here for the palms.Our approach for inferring phylogenies first produces a backbone […]
Advancing data reuse in phyloinformatics using an ontology driven Semantic Web approach
[…] voBio 2011 [], the W3C Workshop on Data and Services Integration [], Translational Medicine Conference at AMIA 2012 [,] and IEEE International Conference on Bioinformatics and Biomedicine []. Recent "PhyloTastic" hackathons [] have also developed resources to promote the reuse of published trees and underlying metadata.Other prior art with regard to the Semantic Web-ready definition of phylogeny-r […]
taxize: taxonomic search and retrieval in R
[…] The correct spellings are Helianthus annuus and Homo sapiens. Another approach uses the Taxonomic Name Resolution Service via the Taxosaurus API http:// taxosaurus.org/ developed by iPLant and the Phylotastic organization. In this example is a list of species names, some of which are misspelled, and then call the API with the tnrs function. mynames <- c ( "Helianthus annuus" ٫ "Pinus contort […]
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