Phylotastic statistics
Phylotastic specifications
Information
Unique identifier | OMICS_23509 |
---|---|
Name | Phylotastic |
Interface | Web user interface |
Restrictions to use | None |
Input data | An url, a document or a taxon. |
Input format | TXT,ZIP,PDF |
Output data | A tree. |
Programming languages | Java, Javascript, Perl, PHP, Python, R, SPARQL, awk |
License | BSD 3-clause “New” or “Revised” License, GNU General Public License version 3.0, MIT License |
Computer skills | Basic |
Stability | Stable |
Maintained | No |
Documentation
- Video: https://youtu.be/S7rGIlFo03o
Maintainers
Additional information
Publications for Phylotastic
Phylotastic: improving access to tree-of-life knowledge with flexible, on-the-fly delivery of trees.
Phylotastic in publications
(3)Toward a Self Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa
[…] units for ancestral range analyses (; töpel et al., this issue); the estimation of rates of migration, speciation, and extinction; extracting subtrees from global species-level chronograms (http://phylotastic.org); among numerous other macroevolutionary and biogeographical analyses, some of which are exemplified here for the palms., our approach for inferring phylogenies first produces […]
[…] in python and uses the biopython[], beautiful-soup[] and requests[] packages to handle fasta sequences and communicate with the various apis and web services used, such as ncbi genbank and the phylotastic tnrs service. the steps of the pipeline are shown in figure and are explained in more detail below., as an offline process, a local database is maintained containing the ncbi taxon ids […]
Advancing data reuse in phyloinformatics using an ontology driven Semantic Web approach
[…] 2011 [], the w3c workshop on data and services integration [], translational medicine conference at amia 2012 [,] and ieee international conference on bioinformatics and biomedicine []. recent "phylotastic" hackathons [] have also developed resources to promote the reuse of published trees and underlying metadata., other prior art with regard to the semantic web-ready definition […]
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