PhyloWidget statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Tree visualization chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

PhyloWidget specifications

Information


Unique identifier OMICS_04261
Name PhyloWidget
Interface Web user interface
Restrictions to use None
Input format Newick
License GNU General Public License version 2.0
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline PhyloWidget <>

Publication for PhyloWidget

PhyloWidget in publications

 (17)
PMCID: 5435079
PMID: 28369572
DOI: 10.1093/molbev/msx055

[…] works as expected. however, it does not offer an explicit option to change this behavior, that is, to interpret numbers as belonging to the nodes, or strings as belonging to the branches., phylowidget interprets node labels as node labels. thus, rerooting a tree with branch support values yields errors. also, rerooting does not resolve the initial trifurcation, similar to evolview. […]

PMCID: 5115800
PMID: 27861551
DOI: 10.1371/journal.pone.0166757

[…] against the ncbi nr/nt database via blastn. sequences producing full-length hits were collected and aligned using muscle []. the phylogenetic tree was constructed using raxml [] and visualized using phylowidget []. phylogenetic analysis of the vly gene sequences was aligned using clustalw []. as before, raxml [] and phylowidget [] were used to derive and visualize the tree, respectively., […]

PMCID: 5010914
PMID: 27503296
DOI: 10.1093/gbe/evw187

[…] of each node age were computed using custom r script loading the package ape () and following methodological recommendations of , i.e., type = 8. trees were graphically edited using the software phylowidget () and dendroscope 3.3.2 ()., phylogenetic informativeness (pi) was investigated on the amino acid dataset using the phydesign portal () and rate4site () to estimate site-specific […]

PMCID: 4821253
PMID: 27069642
DOI: 10.1098/rsos.150484

[…] (parameters: -m lg -c 4 -a e -s best -o tlr) [] and rooted with newick utilities [], using the acorn worm and sea urchin rar sequences as outgroup. the resulting tree was then manually adjusted with phylowidget [] to reconcile the phylogeny with the results of the probabilistic orthology assessment. the observed differences were due to the fact that the cyclostome sequences are unusually […]

PMCID: 4670726
PMID: 26538579
DOI: 10.15252/msb.20156269

[…] positions., the distance between species a and b was the direct sum of branch lengths leading from a endpoint to b endpoint along the phylogenetic tree. these distances were the same that appear in phylowidget visualization of ensembl data (jordan & piel, ). in case of species not included there, evolutionary distances were extracted from trees published in literature and numerically […]


To access a full list of publications, you will need to upgrade to our premium service.

PhyloWidget institution(s)
EMBL-EBI, Hinxton, Cambridge, UK; Peabody Museum of Natural History, Yale University, New Haven, CT, USA

PhyloWidget reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review PhyloWidget