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Protocols

PhyloWS specifications

Information


Unique identifier OMICS_23512
Name PhyloWS
Alternative name Phyloinformatics Web Services
Software type Application/Script
Interface Application programming interface
Restrictions to use None
Computer skills Advanced
Stability Alpha
Maintained Yes

Documentation


Maintainers


  • person_outline Hilmar Lapp
  • person_outline Hilmar Lapp

Additional information


http://evoinfo.nescent.org/PhyloWS_FAQ

PhyloWS citations

 (505)
library_books

Papain like and legumain like proteases in rice: genome wide identification, comprehensive gene feature characterization and expression analysis

2018
BMC Plant Biol
PMCID: 5952849
PMID: 29764367
DOI: 10.1186/s12870-018-1298-1

[…] mic Express Database (http://signal.salk.edu/cgi-bin/RiceGE). Protein sequence and phylogeny data, including alignments, have been deposited in the TreeBASE repository (http://purl.org/phylo/treebase/phylows/study/TB2:S22378). […]

library_books

First molecular detection and characterization of Marek’s disease virus in red crowned cranes (Grus japonensis): a case report

2018
PMCID: 5883596
PMID: 29615025
DOI: 10.1186/s12917-018-1437-9

[…] The datasets analysed during the current study are available in the TreeBASE repository. Our data are posted as NEXUS files in the following public domain resources: http://purl.org/phylo/treebase/phylows/study/TB2:S22355. The viral protein sequences of different MDV strains were deposited in GenBank under the accession number in Tables , and . […]

library_books

Comparison of taxon‐specific versus general locus sets for targeted sequence capture in plant phylogenomics

2018
Appl Plant Sci
PMCID: 5895190
PMID: 29732262
DOI: 10.1002/aps3.1032

[…] locus sets. Concatenated alignments for each locus set are available in the Dryad Digital Repository (https://doi.org/10.5061/dryad.v6q0p; Chau et al., ) and TreeBASE (http://purl.org/phylo/treebase/phylows/study/TB2:S21931). […]

library_books

Alternative splicing after gene duplication drives CEACAM1 paralog diversification in the horse

2018
BMC Evol Biol
PMCID: 5856374
PMID: 29544443
DOI: 10.1186/s12862-018-1145-x

[…] available at NCBI GenBank accession numbers MF564057- MF564071. Phylogenetic trees, sequence data and alignments used to produce the results are available at TreeBASE (http://purl.org/phylo/treebase/phylows/study/TB2:S21963). […]

library_books

MADS box family genes in sheepgrass and their involvement in abiotic stress responses

2018
BMC Plant Biol
PMCID: 5853078
PMID: 29540194
DOI: 10.1186/s12870-018-1259-8

[…] this manuscript as Additional files , , and . We have uploaded the sequence data and phylogeny data to the Treebase repository with the following Study Accession URL: http://purl.org/phylo/treebase/phylows/study/TB2:S22364. […]

library_books

Preliminary studies on isolates of Clostridium difficile from dogs and exotic pets

2018
PMCID: 5845233
PMID: 29523201
DOI: 10.1186/s12917-018-1402-7

[…] The datasets generated and/or analysed during the current study are available in the TreeBASE repository, http://purl.org/phylo/treebase/phylows/study/TB2:S22326.The datasets generated and/or analysed during the current study are not publicly available due to the full clinical files from the animals whose samples were included in this […]

Citations

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