Phyre specifications
- Unique identifier:
- OMICS_06087
- Alternative names:
- 3DPSSM, Phyre2, 3D-PSSM
- Restrictions to use:
- Academic or non-commercial use
- Input format:
- FASTA,RAW
- Version:
- 2.0
- Maintained:
- Yes
- Name:
- Protein Homology/analogy Recognition Engine
- Interface:
- Web user interface
- Input data:
- An amino acid sequence.
- Computer skills:
- Basic
- Stability:
- Stable
Subtools
- BackPhyre
- PhyreAlarm
- Phyre Investigator
Phyre support
Documentation
Maintainers
- Michael Sternberg <>
- Lawrence Kelley <>
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Publications
-
(Kelley and Sternberg, 2009)
Protein structure prediction on the Web: a case study using the Phyre server.
Nat Protoc.
PMID: 19247286 -
(Kelley et al., 2015)
The Phyre2 web portal for protein modeling, prediction and analysis.
Nat Protoc.
PMID: 25950237 DOI: 10.1038/nprot.2015.053 -
(Kelley et al., 2000)
Enhanced genome annotation using structural profiles in the program 3D-PSSM.
J Mol Biol.
PMID: 10860755 DOI: 10.1006/jmbi.2000.3741
Institution(s)
Structural Bioinformatics Group, Imperial College London, London, UK
Funding source(s)
Supported by the Biotechnology and Biological Sciences Research Council (BBSRC) (BB/J019240/1, BB/F020481/1), the Medical Research Council (MRC) (MRC Standard Research Student (DTA) G1000390-1/1) and the Engineering and Physical Sciences Research Council (EPSRC) (EPSRC Standard Research Student (DTG) EP/K502856/1).
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