PHYREG pipeline

PHYREG specifications

Information


Unique identifier OMICS_12477
Name PHYREG
Alternative name Phylogenetic Regression
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.7
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Alan Grafen <>

PHYREG IN pipeline

2017
PMCID: 5445277
PMID: 28545448
DOI: 10.1186/s12859-017-1696-7

[…] the regression analyses, we performed phylogenetic logistic regression analyses using the function phyloglm in the r-package phylolm (version 2.5). the phylogenetic trees, which are required for phylogenetic regression, were constructed using 16s rrna sequence data according to the all-species living tree project [41] (additional files 3, 4 and 5). 16s rrna gene sequences were obtained […]

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