PhysBinder pipeline

PhysBinder specifications

Information


Unique identifier OMICS_12907
Name PhysBinder
Interface Web user interface
Restrictions to use None
Input data Genomic sequences
Input format FASTA-formatted sequences
Output data Summary table
Programming languages Javascript, Perl, PHP
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Pieter De Bleser <>

Publication for PhysBinder

PhysBinder IN pipeline

2017
PMCID: 5435695
PMID: 28515481
DOI: 10.1038/s41598-017-02291-1

[…] databases. logo representation of base conservation was obtained by the weblogo software70., the prediction of sp1 binding sites in putative g4 forming sequences were performed by the web-based tool physbinder using the model hsa0000031.1 [sp1] with the max. f-measure threshold (2 × true positives/(2 × true positives + false positives + false negatives)48., the evolutionary history was inferred […]

PhysBinder institution(s)
Department for Molecular Biomedical Research, VIB, Ghent University, Ghent, Belgium; Department of Biomedical Molecular Biology, Ghent University, Ghent, Belgium
PhysBinder funding source(s)
Agency for Innovation through Science and Technology in Flanders: [091213]; Research Foundation - Flanders (FWO): [G.0235.10].

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