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- person_outline Mitsuyasu Hasebe
Publication for PHYSCObase
In Silico and Biochemical Analysis of Physcomitrella patens Photosynthetic Antenna: Identification of Subunits which Evolved upon Land Adaptation
[…] Sequence searches were performed in PHYSCObase database (http://moss.nibb.ac.jp/blast/blast.html) that contained 196,310 sequences from clones isolated from three Physcomitrella patens full-length-enriched cDNA libraries , sequenced bot […]
Evolutionary genomics of plant genes encoding N terminal TM C2 domain proteins and the similar FAM62 genes and synaptotagmin genes of metazoans
[…] d Oryza sativa but both of these represent relatively recently evolved angiosperms whereas the moss genome represents an ancient bryophyte. I used the trace archive at NCBI  as well as resources at PHYSCObase  where transcript sequences are also available. I confirmed the genomic and transcript sequences from several Physcomitrella patens gene loci and deposited these sequences in the public d […]
Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteins
[…] rice SR proteins using ClustalW program () at . Shading of multiple alignment files was done with BOXSHADE at .Contigs were used to retrieve genomic sequences at NCBI and species specific databases (PHYSCObase, ; ChlamyDB ). Genomic sequences were used in screen for additional ESTs representing splice variants. Gene structures and alternative splicing events were finally analysed using Geneseqer. […]
Genome wide comparative analysis of the IQD gene families in Arabidopsis thaliana and Oryza sativa
[…] d for subsequent analysis. Sequences encoding putative IQD proteins in Pinus ssp. and Physcomitrella patens were identified by BLAST searches of the TIGR Gene Indices  and of the moss database NIBB PHYSCObase . […]
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