Physher specifications


Unique identifier OMICS_12356
Name Physher
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Physher requires a single configuration file. For inferring rates and times, the configuration file requires an alignment (FASTA or NEXUS format) and a rooted tree (Newick or NEXUS format).
Output data Output trees are in nexus format as they contain information such as rates and confidence intervals.
Operating system Unix/Linux, Mac OS
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Mathieu Fourment <>

Physher article

Physher institution(s)
Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Biological Sciences and Sydney Medical School, The University of Sydney, Sydney, Australia

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