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Pseudo amino acid composition generation software tools | Protein sequence analysis

With the avalanche of biological sequences generated in the post-genomic age, one of the most challenging problems in computational biology is how to effectively formulate the sequence of a biological sample (such as DNA, RNA or protein) with a…
PseKRAAC
Web

PseKRAAC The pseudo K-tuple Reduced Amino Acids Composition

A web server for generating pseudo K-tuple reduced amino acids composition. By…

A web server for generating pseudo K-tuple reduced amino acids composition. By implementing reduced amino acid alphabets, the protein complexity can be significantly simplified, which leads to…

Pse-in-One
Desktop
Web

Pse-in-One

Generates nearly all the possible feature vectors for DNA, RNA and protein…

Generates nearly all the possible feature vectors for DNA, RNA and protein sequences. Pse-in-One contains three sub web servers: (1) PseDAC-General, (2) PseRAC-General and (3) PseAAC-General. Each of…

PseAAC-Builder
Desktop

PseAAC-Builder PSEudo-Amino Acid Composition-Builder

A program to generate various different modes of Chou's general PseAAC,…

A program to generate various different modes of Chou's general PseAAC, such as the gene ontology mode, the functional domain mode, and the sequential evolution mode. PseAAC-General allows the…

PepComp
Desktop

PepComp

Provides a parallel method for enumerating all theoretically possible amino…

Provides a parallel method for enumerating all theoretically possible amino acid compositions in several proteomics workflows, including peptide mass fingerprinting, mass defect labeling, mass defect…

propy
Desktop

propy protein in python

A freely available, open source python package for calculating the widely used…

A freely available, open source python package for calculating the widely used structural and physicochemical features of proteins and peptides from amino acid sequence. propy computes five feature…

PseAAC
Web

PseAAC

Provides the user with a flexible generator for various kinds of PseAA…

Provides the user with a flexible generator for various kinds of PseAA composition. For instance, the PseAAC server allows the user to generate 63 different parallel correlation types of PseAA…

PROFEAT
Web

PROFEAT Protein Features

Calculates the structural and physicochemical descriptors of proteins and…

Calculates the structural and physicochemical descriptors of proteins and protein pairs. PROFEAT enables the automatic detection of each connected network, ranks them by size, and computes the…

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