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PhytAMP specifications

Information


Unique identifier OMICS_03240
Name PhytAMP
Restrictions to use None
Maintained Yes

Publication for PhytAMP

PhytAMP citations

 (6)
library_books

Computer aided identification of a Hevein like antimicrobial peptide of bell pepper leaves for biotechnological use

2016
BMC Genomics
PMCID: 5249031
PMID: 28105928
DOI: 10.1186/s12864-016-3332-8

[…] P < 0.05) with two mature Hevein fragments from Hevea brasiliensis and Eucommia ulmoides; CAMP found 16 Hevein-like and/or CBD-protein that showed significant alignments (E-value from 2e-16 to 6e-8). PhytAMP DB showed significant alignment for HEV-CANN with the sequence of the antimicrobial peptide Hevein from Hevea brasiliensis [PhytAMP:PHYT00231, HEV-PHYT00231], which is 43 amino acid residues a […]

call_split

A Large Scale Structural Classification of Antimicrobial Peptides

2015
Biomed Res Int
PMCID: 4426897
PMID: 26000295
DOI: 10.1155/2015/475062
call_split See protocol

[…] M contains 7,007 unique AMP sequences extracted from twelve databases (). The twelve databases include APD2 [], AVPpred [], BACTIBASE [], BAGEL3 [], CAMP2 [], DADP [], DAMPD [], HIPdb [], PenBase [], PhytAMP [], RAPD [], and YADAMP []. The AMP sequences in ADAM were mostly derived from natural sources, covering a broad spectrum of species such as archaea, bacteria, plants, and animals. 2497 out of […]

library_books

New Milk Protein Derived Peptides with Potential Antimicrobial Activity: An Approach Based on Bioinformatic Studies

2014
Int J Mol Sci
PMCID: 4159866
PMID: 25141106
DOI: 10.3390/ijms150814531

[…] The antimicrobial activity of peptides can be analyzed with the use of dedicated tools in several databases. Various search algorithms are available in APD [,], Bactibase [], PhytAMP [], AntiBP [], AMPA [] and CAMP [,]. APD relies on the physicochemical properties of peptides, and if those parameters are within the APD-defined space for natural AMPs, the program will align […]

library_books

C PAmP: Large Scale Analysis and Database Construction Containing High Scoring Computationally Predicted Antimicrobial Peptides for All the Available Plant Species

2013
PLoS One
PMCID: 3823563
PMID: 24244550
DOI: 10.1371/journal.pone.0079728

[…] tributions for antimicrobial/non-antimicrobial predictions for one of the cross-validation test sets consisting of ∼1050 peptides (results from the rest cross-validation runs are similar).We selected PhytAMP, which contains experimentally validated plant antimicrobial peptides, in order to test our algorithm's predictive power against that of CAMP. We firstly used all the 271 antimicrobial peptide […]

library_books

SymGRASS: a database of sugarcane orthologous genes involved in arbuscular mycorrhiza and root nodule symbiosis

2013
BMC Bioinformatics
PMCID: 3548678
PMID: 23368899
DOI: 10.1186/1471-2105-14-S1-S2

[…] ins were predicted in nodules and seed from legumes species []. Thus, we attempt to access the information about this kind of molecules among sugarcane's transcribed genes. A tBLASTn search using the PhytAMP database as query against SymGRASS returned 99 AMP candidates. A differential display was generated for these AMPs candidates to compare their expression profile in the libraries. It became cl […]

library_books

Prediction of Antimicrobial Peptides Based on Sequence Alignment and Feature Selection Methods

2011
PLoS One
PMCID: 3076375
PMID: 21533231
DOI: 10.1371/journal.pone.0018476

[…] everal computational methods , , , , , , have been proposed for the predicting AMPs. However, AMPer method is not available at http://www.cnbi2.com/cgi-bin/amp.pl as described in . BACTIBASE , and PhytAMP methods were specifically designed for bacteriocin and plant respectively. As for AntiBP and AntiBP2 methods , they were designed for identifying the AMPs in a protein sequence, and hence co […]

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PhytAMP institution(s)
Unité de Protéomie Fonctionnelle and Biopréservation Alimentaire, Institut Supérieur des Sciences Biologiques Appliquées de Tunis, Université El Manar, Tunis, Tunisie

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