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- person_outline Paul Kersey
Publication for PhytoPath
Ensembl Genomes 2018: an integrated omics infrastructure for non vertebrate species
[…] life in a consistent manner. In addition, Ensembl Genomes contributes to collaborative database projects focused on various domains of life, including Gramene (http://www.gramene.org) () for plants, PhytoPath (http://phytopathdb.org) () for plant pathogens, VectorBase (http://www.vectorbase.org) () for invertebrate vectors of human pathogens, and WormBase (http://www.wormbase.org) () for helminth […]
Gall ID: tools for genotyping gall causing phytopathogenic bacteria
[…] n the Gall-ID tools is also available for download on the “Database Downloads” tab of the Gall-ID website. The 16S rDNA databases were populated in a similar manner, with one small exception. For the Phytopath-Type tool, the sequence of the 16S rRNA-encoding gene from C58 of Agrobacterium was used as a query to retrieve corresponding sequences from 345 isolates distributed across the different gen […]
Ensembl Genomes 2016: more genomes, more complexity
[…] as where their expertise is high and a research programme is active. Ensembl Genomes is working to encourage community-led curation in the context of our partnerships with WormBase (), VectorBase (), PhytoPath (Pedro et al., in press) /PHI-base () and PomBase (), providing tools such as Web Apollo () and Canto () to allow the remote submission of structural and functional annotation. Through these […]
The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum
[…] 0330, EMBL:HG970331, EMBL:HG970332, EMBL:HG970333, EMBL:HG970334, EMBL:HG970335]. The completed F. graminearum genome is available within ENSEMBL fungi  and displayed on the plant pathogen specific PhytoPath database . […]
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