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PhytoPath specifications


Unique identifier OMICS_10268
Name PhytoPath
Restrictions to use None
Maintained Yes


  • person_outline Paul Kersey

Publication for PhytoPath

PhytoPath citations


Ensembl Genomes 2018: an integrated omics infrastructure for non vertebrate species

Nucleic Acids Res
PMCID: 5753204
PMID: 29092050
DOI: 10.1093/nar/gkx1011

[…] life in a consistent manner. In addition, Ensembl Genomes contributes to collaborative database projects focused on various domains of life, including Gramene ( () for plants, PhytoPath ( () for plant pathogens, VectorBase ( () for invertebrate vectors of human pathogens, and WormBase ( () for helminth […]


Gall ID: tools for genotyping gall causing phytopathogenic bacteria

PMCID: 4958008
PMID: 27547538
DOI: 10.7717/peerj.2222

[…] n the Gall-ID tools is also available for download on the “Database Downloads” tab of the Gall-ID website. The 16S rDNA databases were populated in a similar manner, with one small exception. For the Phytopath-Type tool, the sequence of the 16S rRNA-encoding gene from C58 of Agrobacterium was used as a query to retrieve corresponding sequences from 345 isolates distributed across the different gen […]


Ensembl Genomes 2016: more genomes, more complexity

Nucleic Acids Res
PMCID: 4702859
PMID: 26578574
DOI: 10.1093/nar/gkv1209

[…] as where their expertise is high and a research programme is active. Ensembl Genomes is working to encourage community-led curation in the context of our partnerships with WormBase (), VectorBase (), PhytoPath (Pedro et al., in press) /PHI-base () and PomBase (), providing tools such as Web Apollo () and Canto () to allow the remote submission of structural and functional annotation. Through these […]


The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum

BMC Genomics
PMCID: 4511438
PMID: 26198851
DOI: 10.1186/s12864-015-1756-1

[…] 0330, EMBL:HG970331, EMBL:HG970332, EMBL:HG970333, EMBL:HG970334, EMBL:HG970335]. The completed F. graminearum genome is available within ENSEMBL fungi [] and displayed on the plant pathogen specific PhytoPath database []. […]

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PhytoPath institution(s)
The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, UK
PhytoPath funding source(s)
United Kingdom Biotechnology and Biological Sciences Research Council (BBSRC) [BB/I000488/1, BB/I/001077/1, BB/K020056/1]. PHI-base receives additional support from the BBSRC as a National Capability [BB/J/004383/1]. Specific funding for the inclusion of Puccinia graminis f. sp. tritici within Ensembl Fungi has been approved by a grant from the Bill and Melinda Gates Foundation [OPPGD1491]

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