Main logo
?
Online

Performs gene set analysis (GSA) using various statistical methods, from different gene level statistics and a wide range of gene-set collections. The piano package contains functions for combining the results of multiple runs of gene set analyses. It also includes several functions for result visualization, including a network-based plot showing overlapping gene sets and their significance. Finally, piano also contains functions for the full analysis of microarray data, if the user wants a fully integrated GSA starting from raw expression data. piano is available as an R/Bioconductor package. Some of its functionalities are also available through the browser-based GUI BioMet Toolbox.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

piano forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

piano classification

piano specifications

Unique identifier:
OMICS_01558
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Name:
Platform for Integrated Analysis of Omics data
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
1.14.5
Maintained:
Yes

piano distribution

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

download

piano support

Documentation

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Department of Chemical and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden

Funding source(s)

This work was supported by the Knut and Alice Wallenberg foundation, the Chalmers foundation, the Bioinformatics Infrastructure for Life Sciences (BILS).

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.