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piCALL | A probabilistic method for the detection and genotyping of small indels from population-scale sequence data

Allows population indel detection and genotyping. piCALL detects and allows genotyping of small indels from population-scale sequence data. The software is compatible with data from different sequencing platforms but requires all samples to be sequenced using the same sequencing platform. The method requires sequence data from a sufficient number of samples to accurately estimate the population genotypes. Its performance was assessed using population sequencing data generated by the 1000 Genomes project (exon sequencing).

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piCALL forum

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piCALL classification

piCALL specifications

Unique identifier:
OMICS_02098
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
C
Version:
01
Source code URL:
https://sites.google.com/site/vibansal/software/picall/piCALL.v01.tar.gz?attredirects=0&d=1

piCALL distribution

versioning

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No versioning.

piCALL support

Maintainer

  • Vikas Bansal <>

Additional information

The latest version has been integrated into the package CRISP

Credits

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Publications

Institution(s)

Scripps Genomic Medicine, Scripps Translational Science Institute, La Jolla, CA, USA; Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA, USA

Funding source(s)

Supported by the Scripps Translational Science Institute Clinical Translational Science Award (National Institutes of Health 5UL1RR025774).

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