Picard specifications

Information


Unique identifier OMICS_01066
Alternative names PicardTools, Picard-tools
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Input format SAM, BAM, CRAM, VCF, FASTQ
Output format TXT, VCF, BAM, SAM, FASTQ, BFQ, BAI
Biological technology Illumina
Operating system Unix/Linux
Programming languages Java
License MIT License
Computer skills Advanced
Version 2.0.1
Stability Stable
Requirements SAMtools/htsjdk
Maintained Yes

Subtools


  • MarkDuplicates
  • SortSam
  • SamToBam
  • SamToFastq
  • FastqToSam

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Documentation


Picard institution(s)
Broad Institute, MA, USA

Picard review

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Arup Ghosh

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Desktop
Sort, filter, merge, randomize SAM/BAM/CRAM and VCF files.

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