PICRUSt pipeline

PICRUSt specifications

Information


Unique identifier OMICS_06549
Name PICRUSt
Alternative name Phylogenetic investigation of communities by reconstruction of unobserved states
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

Taxon


  • Archaebacteria
  • Eubacteria

Download


Versioning


Add your version

Information


Unique identifier OMICS_06549
Name PICRUSt
Alternative name Phylogenetic investigation of communities by reconstruction of unobserved states
Interface Web user interface
Restrictions to use None
Programming languages Python
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes

Taxon


  • Archaebacteria
  • Eubacteria

Publication for Phylogenetic investigation of communities by reconstruction of unobserved states

PICRUSt citations

 (3)
2017
PMCID: 5702722

[…] reads) (supplementary table s2). abundance data from 16s sequences were corrected for ribosome copy number bias before predicting the abundance of cog ontology functions in soil metagenomes using picrust. imputed and sequenced metagenome cog function tables were rarified separately and then both normalized to 10 million cogs/sample to compare accuracy of picrust predictions using […]

2017
PMCID: 5323387

[…] qiime, mothur, and lotus have been widely used to process data from high-throughput sequencing (schloss et al., 2009; kuczynski et al., 2011; hildebrand et al., 2014). additionally, picrust (http://picrust.github.com/) has been developed to predict metabolic pathways based on 16s data and a reference genome database (langille et al., 2013). although this approach is unable to outperform […]

2015
PMCID: 4640069

[…] of at least 80% was generated for each otu and the otu count table was picked against the greengenes reference otu identifiers (version 13.5) for use in the two-step functional inference pipeline picrust (ref. 51). the picrust uses precomputed gene copy numbers for kegg orthologous families based on finished bacterial genomes available in the integrated microbial genome database to predict […]

PICRUSt institution(s)
Faculty of Computer Science, Dalhousie University, Halifax, NS, Canada

PICRUSt reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review PICRUSt