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Protocols

Piface specifications

Information


Unique identifier OMICS_12674
Name Piface
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Documentation


Maintainer


  • person_outline Ozlem Keskin

Publication for Piface

Piface citations

 (4)
library_books

SnapDock—template based docking by Geometric Hashing

2017
Bioinformatics
PMCID: 5870628
PMID: 28881968
DOI: 10.1093/bioinformatics/btx233

[…] present a Flexible Template-Based Docking scheme, which allows hinge-based flexibility in one of the molecules. SnapDock was validated on the ZLAB 4.0 Docking Benchmark () using the Dockground () and PIFACE () template libraries. To mimic “real-life” large-scale docking, we applied SnapDock with the PIFACE library to model the interfaces of all the (non-redundant) complexes (some of them multimeri […]

call_split

Monoamine oxidase B gene variants associated with attention deficit hyperactivity disorder in the Indo Caucasoid population from West Bengal

2016
BMC Genet
PMCID: 4921030
PMID: 27341797
DOI: 10.1186/s12863-016-0401-6
call_split See protocol

[…] ning the UNPHASED at 1000-fold iteration. To examine genotypic association, only female cases and female controls were considered. To calculate the power of the tests showing significant association, Piface version 1.72 [] was used. Online odds ratio calculator [] was used to calculate the odds ratio (OR). Pairwise linkage disequilibrium (LD) between the variants was measured using the Haploview p […]

library_books

Association between Low Density Lipoprotein Receptor Related Protein 2 Gene Polymorphisms and Bone Mineral Density Variation in Chinese Population

2011
PLoS One
PMCID: 3235174
PMID: 22174918
DOI: 10.1371/journal.pone.0028874

[…] six tagSNPs nor the haplotypes was in total association or within-family association with the peak BMD variation at the L1-4 and hip sites by QTDT analysis. The statistical power was estimated by the Piface program (version 1.65 http://www.math.uiowa.edu/~rlenth/Power/) at the time that this study was designed. In our previous association studies of 401 female-offspring nuclear families with 1260 […]

library_books

No association of the polymorphisms of the frizzled related protein gene with peak bone mineral density in Chinese nuclear families

2010
BMC Med Genet
PMCID: 2806249
PMID: 20043861
DOI: 10.1186/1471-2350-11-1

[…] estimates were conducted using the linear regression of parents' mean value and offspring's value of every phenotype (described at http://www.heritability.com). Statistical power was estimated by the Piface program (version 1.65 http://www.math.uiowa.edu/~rlenth/Power/) in our current sample size according to the MAF of every genotype and the variation in BMD. Linkage disequilibrium block structur […]

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Piface institution(s)
Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, Istanbul, Turkey; National Cancer Institute, Cancer and Inflammation Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc., National Cancer Institute, Frederick, MD, USA; Sackler Institute of Molecular Medicine, Department of Human Genetics and Molecular Medicine, Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel
Piface funding source(s)
This project has been funded in whole or in part with Federal funds from the National Cancer Institute, National Institutes of Health, under contract number HHSN261200800001E. This research was supported (in part) by the Intramural Research Program of the NIH, National Cancer Institute, Center for Cancer Research.

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