PiGx RNA-seq specifications


Unique identifier OMICS_33677
Name PiGx RNA-seq
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A set of raw fastq read files and the experimental design as described by the user.
Input format FASTQ
Output data Some sequencing quality control, ChIP quality control, peak calling, and IDR estimation.
Operating system Unix/Linux
Programming languages Python, R, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes




No version available



  • person_outline Altuna Akalin

Additional information


Publication for PiGx RNA-seq

PiGx RNA-seq institution(s)
The Bioinformatics Platform, The Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Berlin, Germany
PiGx RNA-seq funding source(s)
Supported by the German Federal Ministry of Education and Research (BMBF) as part of the RNA Bioinformatics Center of the German Network for Bioinformatics Infrastructure (de.NBI) [031 A538C RBC (de.NBI)].

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