PiGx RNA-seq specifications

Information


Unique identifier OMICS_33677
Name PiGx RNA-seq
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A set of raw fastq read files and the experimental design as described by the user.
Input format FASTQ
Output data Some sequencing quality control, ChIP quality control, peak calling, and IDR estimation.
Operating system Unix/Linux
Programming languages Python, R, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

Download


download.png

Versioning


No version available

Documentation


Maintainer


  • person_outline Altuna Akalin

Additional information


http://bioinformatics.mdc-berlin.de/pigx/

Publication for PiGx RNA-seq

PiGx RNA-seq institution(s)
The Bioinformatics Platform, The Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Berlin, Germany
PiGx RNA-seq funding source(s)
Supported by the German Federal Ministry of Education and Research (BMBF) as part of the RNA Bioinformatics Center of the German Network for Bioinformatics Infrastructure (de.NBI) [031 A538C RBC (de.NBI)].

PiGx RNA-seq reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review PiGx RNA-seq