PILER-CR specifications

Information


Unique identifier OMICS_03714
Name PILER-CR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Version 1.06
Stability Stable
Maintained Yes

Taxon


  • Archaebacteria
  • Eubacteria

Versioning


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Maintainer


  • person_outline Robert Edgar <>

PILER-CR article

PILER-CR citation

2017
PMCID: 5244535

[…] procedure of the doe-jgi microbial genome annotation pipeline (mgap v.4) supported by the jgi (walnut creek, ca; usa) [15]. briefly, crispr elements were determined by the programs crt [16] and piler-cr v1.06 [17]. non-coding rnas, and trnas, were predicted by trnascan-se 1.3.1 [18]. rrna genes were identified by hmmer 3.1b2 [19]. protein-coding genes were determined by prodigal v2.6.2 […]

PILER-CR institution(s)
45 Monterey Dr; Tiburon, CA, USA

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