Pilon specifications

Unique identifier:
OMICS_14553
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA, BAM
Output format:
FASTA
Programming languages:
Java, Scala
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Alternative name:
PilonGrid
Interface:
Command line interface
Input data:
Input genome and aligned read files
Output data:
A modified genome including all single-base, small indel, gap filling, mis-assembly and large-event correction from the input genome.
Operating system:
Unix/Linux, Mac OS
License:
GNU General Public License version 2.0
Version:
1.21
Requirements:
JRE

versioning

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Pilon distribution

download

Pilon support

Maintainer

  • Bruce Walker <>

Additional information

https://github.com/skoren/PilonGrid

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Publications

Institution(s)

Broad Institute of MIT and Harvard, Cambridge, MA, USA; VIB Department of Plant Systems Biology, Ghent University, Ghent, Belgium

Funding source(s)

This project has been funded in part with Federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under Contract No.:HHSN272200900018C. This project has been also funded in part with Federal funds from the National Human Genome Research Institute, National Institutes of Health, Department of Health and Human Services, under grant U54HG003067.

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