PiNAT specifications


Unique identifier OMICS_20062
Name PiNAT
Alternative name Protein interaction Network Assessment Tool
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A list of protein names (UniProt, Swissprot / Trebml, Genbank or DIP) or your own network.
Output data A visual description of the predicted spatial flow of a pathway in the cell and a list of scores for each interaction, based on different sequence-level analyses of the individual proteins.
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for Protein interaction Network Assessment Tool

PiNAT institution(s)
Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA; Columbia University Center for Computational Biology and Bioinformatics (C2B2), New York, NY, USA; NorthEast Structural Genomics Consortium (NESG), Columbia University, New York, NY, USA; Department of Biomedical Informatics, Columbia University, New York, NY, USA
PiNAT funding source(s)
Supported by the grants: RO1-GM64633-01 from the National Institutes of Health (NIH) and the grant RO1-LM07329-01 from the National Library of Medicine (NLM).

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